RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NUFIP1Q9UHK0 495 aaKnown RBP11.71□□□□□ -0.54
LIMS1-204ENST00000409441 DHDHQ9UQ10 334 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 MRPS7Q9Y2R9 242 aaKnown RBP11.71□□□□□ -0.54
LIMS1-204ENST00000409441 NUBP2Q9Y5Y2 271 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 CIB4A0PJX0 185 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 PNPP00491 289 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 CD3GP09693 182 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 RNF224P0DH78 156 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 COX5AP20674 150 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 ACHEP22303 614 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 CDAP32320 146 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 BTCP35070 178 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 GUCA1AP43080 201 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-204ENST00000409441 RAG2P55895 527 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 RAB25P57735 213 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 AP3S2P59780 193 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 KLF9Q13886 244 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-204ENST00000409441 STK11Q15831 433 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 GABRA6Q16445 453 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 KRT74Q7RTS7 529 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 DCXRQ7Z4W1 244 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 CDH24Q86UP0 819 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 GLCCI1Q86VQ1 547 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 SYNPRQ8TBG9 265 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 RNF133Q8WVZ7 376 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 RNASE6Q93091 150 aaKnown RBP11.7□□□□□ -0.54
LIMS1-204ENST00000409441 LRRC46Q96FV0 321 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 ZNF486Q96H40 463 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-204ENST00000409441 FOXB1Q99853 325 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 TMEM38BQ9NVV0 291 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 ITGB1BP2Q9UKP3 347 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 SLC22A13Q9Y226 551 aa11.7□□□□□ -0.54
LIMS1-204ENST00000409441 A0A096LPE4 126 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 A0A1W2PPL8 197 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 A0A1W2PPZ6 126 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 CLEC18AA5D8T8 446 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 NAP1L6A6NFF2 107 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 C16orf97H3BN30 126 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 RAD51DO75771 328 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 MPZL1O95297 269 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 DHFRP00374 187 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 UBCP0CG48 685 aaKnown RBP11.69□□□□□ -0.54
LIMS1-204ENST00000409441 ARSBP15848 533 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 PSMB1P20618 241 aaKnown RBP11.69□□□□□ -0.54
LIMS1-204ENST00000409441 LAP3P28838 519 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 MFGE8Q08431 387 aaPredicted RBP11.69□□□□□ -0.54
LIMS1-204ENST00000409441 SGCAQ16586 387 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 TMEM244Q5VVB8 128 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 ANKRD16Q6P6B7 361 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 CLEC18BQ6UXF7 455 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 ZNF813Q6ZN06 617 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 BHLHA15Q7RTS1 189 aaPredicted RBP11.69□□□□□ -0.54
LIMS1-204ENST00000409441 TCTE3Q8IZS6 198 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 CLEC18CQ8NCF0 446 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 OR51A4Q8NGJ6 313 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 OR1K1Q8NGR3 316 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 SSC4DQ8WTU2 575 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 C11orf40Q8WZ69 217 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 BCL2L2Q92843 193 aaPredicted RBP11.69□□□□□ -0.54
LIMS1-204ENST00000409441 SLC17A5Q9NRA2 495 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 DDX28Q9NUL7 540 aaKnown RBP11.69□□□□□ -0.54
LIMS1-204ENST00000409441 CKLFQ9UBR5 152 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 POU2F3Q9UKI9 436 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 OR52A1Q9UKL2 312 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 HHLA2Q9UM44 414 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 N6AMT1Q9Y5N5 214 aa11.69□□□□□ -0.54
LIMS1-204ENST00000409441 MEGF11A6BM72 1044 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 SLC17A2O00624 439 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 MAS1P04201 325 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 H2BFMP0C1H6 154 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 GSTT2BP0CG30 244 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 CD37P11049 281 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 B4GALT1P15291 398 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 IL32P24001 234 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 GDNFP39905 211 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 CLDN12P56749 244 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 RRAS2P62070 204 aaPredicted RBP11.68□□□□□ -0.54
LIMS1-204ENST00000409441 MRPS34P82930 218 aaKnown RBP11.68□□□□□ -0.54
LIMS1-204ENST00000409441 TFF3Q07654 80 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 TMEM69Q5SWH9 247 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 ZNF627Q7L945 461 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.68□□□□□ -0.54
LIMS1-204ENST00000409441 SLC22A24Q8N4F4 322 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 G6PC2Q9NQR9 355 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 CYB5R1Q9UHQ9 305 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 GTF2A1LQ9UNN4 478 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 RBMX2Q9Y388 322 aaKnown RBP11.68□□□□□ -0.54
LIMS1-204ENST00000409441 C7orf66A4D0T2 115 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 WNT11O96014 354 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 IGFBP3P17936 291 aaPredicted RBP11.68□□□□□ -0.54
LIMS1-204ENST00000409441 GRNP28799 593 aaKnown RBP11.68□□□□□ -0.54
LIMS1-204ENST00000409441 PTH2RP49190 550 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 SRP9P49458 86 aaKnown RBP11.68□□□□□ -0.54
LIMS1-204ENST00000409441 MMP16P51512 607 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 RAB11BQ15907 218 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 KCNMB1Q16558 191 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 ODF4Q2M2E3 257 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 HIKESHIQ53FT3 197 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 FAM27BQ5VT28 67 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 OTPQ5XKR4 325 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms