RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 ABCD3P28288 659 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 RPL35P42766 123 aaKnown RBP4.41□□□□□ -1.7
SMAD4-202ENST00000398417 CLDN6P56747 220 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 RPS27AP62979 156 aaKnown RBP4.41□□□□□ -1.7
SMAD4-202ENST00000398417 UBA52P62987 128 aaKnown RBP4.41□□□□□ -1.7
SMAD4-202ENST00000398417 EXOSC6Q5RKV6 272 aaKnown RBP4.41□□□□□ -1.7
SMAD4-202ENST00000398417 TMEM65Q6PI78 240 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 MRPL55Q7Z7F7 128 aaKnown RBP4.41□□□□□ -1.7
SMAD4-202ENST00000398417 TMEM17Q86X19 198 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 CATSPERDQ86XM0 798 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 MISPQ8IVT2 679 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 OR1J4Q8NGS1 313 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 MSI2Q96DH6 328 aaKnown RBP4.41□□□□□ -1.7
SMAD4-202ENST00000398417 TSNAXQ99598 290 aaKnown RBP4.41□□□□□ -1.7
SMAD4-202ENST00000398417 NPAS1Q99742 590 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 ANKUB1A6NFN9 424 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 XRCC3O43542 346 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 WISP1O95388 367 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 GABRA1P14867 456 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 EPHA4P54764 986 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 CDH26Q8IXH8 852 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 EXD3Q8N9H8 876 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 ZNF714Q96N38 554 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 SPAG8Q99932 426 aaPredicted RBP4.41□□□□□ -1.7
SMAD4-202ENST00000398417 ZCCHC4Q9H5U6 513 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 CHST11Q9NPF2 352 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 P4HTMQ9NXG6 502 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 F5P12259 2224 aa4.41□□□□□ -1.7
SMAD4-202ENST00000398417 OR2M5A3KFT3 312 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 OR5H15A6NDH6 313 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 RFPL4AA6NLU0 287 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 RFPL4AL1F8VTS6 287 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 MPPED1O15442 326 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 CSTBP04080 98 aaKnown RBP4.4□□□□□ -1.7
SMAD4-202ENST00000398417 SERPINA5P05154 406 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 LAP3P28838 519 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 ALDH3B1P43353 468 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 HSF1Q00613 529 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 TAGLNQ01995 201 aaKnown RBP4.4□□□□□ -1.7
SMAD4-202ENST00000398417 EMC4Q5J8M3 183 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 ESX1Q8N693 406 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 OR1N1Q8NGS0 311 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 PRR7Q8TB68 274 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 HAVCR2Q8TDQ0 301 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 KIRREL1Q96J84 757 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 USB1Q9BQ65 265 aaKnown RBP4.4□□□□□ -1.7
SMAD4-202ENST00000398417 KPTNQ9Y664 436 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 A0A1W2PR77 199 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 E5RGE8 158 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 AGTR1P30556 359 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 MAP2K6P52564 334 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 FXYD4P59646 89 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 GABREP78334 506 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 LCN10Q6JVE6 187 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 OR52N4Q8NGI2 321 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 OR5L2Q8NGL0 311 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 OR10R2Q8NGX6 335 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 PNPLA2Q96AD5 504 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 CNTNAP3BQ96NU0 1288 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 ZNF700Q9H0M5 742 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 SLC22A11Q9NSA0 550 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 SLC39A1Q9NY26 324 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 NSG2Q9Y328 171 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 CFAP54Q96N23 3096 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 LILRA5A6NI73 299 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 NDUFS8O00217 210 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 TUBG1P23258 451 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 CSF2RBP32927 897 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 CX3CR1P49238 355 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 RPS4XP62701 263 aaKnown RBP4.4□□□□□ -1.7
SMAD4-202ENST00000398417 PPA1Q15181 289 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 RTN4RL2Q86UN3 420 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 SLC22A24Q8N4F4 322 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 SPICQ8N5J4 248 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 ZNF524Q96C55 264 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 FOXC2Q99958 501 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 DUSP15Q9H1R2 295 aaPredicted RBP4.4□□□□□ -1.7
SMAD4-202ENST00000398417 SLC35D1Q9NTN3 355 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 GNG13Q9P2W3 67 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 SHANK1Q9Y566 2161 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 ABCA4P78363 2273 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 A0A1W2PPC1 479 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 FAM221AA4D161 298 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 KCNAB3O43448 404 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 ZNF205O95201 554 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 CSNK1A1P48729 337 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 IL13RA1P78552 427 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 CCL7P80098 99 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 MFSD13AQ14CX5 517 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 STK35Q8TDR2 534 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 ELP5Q8TE02 316 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 BCL2L2Q92843 193 aaPredicted RBP4.4□□□□□ -1.7
SMAD4-202ENST00000398417 NICN1Q9BSH3 213 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 CNTD2Q9H8S5 307 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 ANKRD10Q9NXR5 420 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 B3GALT1Q9Y5Z6 326 aa4.4□□□□□ -1.7
SMAD4-202ENST00000398417 COL4A6Q14031 1691 aa4.4□□□□□ -1.71
SMAD4-202ENST00000398417 hCG_1809904A0A1W2PP81 198 aa4.4□□□□□ -1.71
SMAD4-202ENST00000398417 A0A1W2PPE2 198 aa4.4□□□□□ -1.71
SMAD4-202ENST00000398417 A0A1W2PR64 198 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms