RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ZNF775Q96BV0 537 aaPredicted RBP8.9□□□□□ -0.98
VPS53-202ENST00000389040 OBP2BQ9NPH6 170 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 STEAP1Q9UHE8 339 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 NUFIP1Q9UHK0 495 aaKnown RBP8.9□□□□□ -0.98
VPS53-202ENST00000389040 POU2F3Q9UKI9 436 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 FBXL3Q9UKT7 428 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 MYO7BQ6PIF6 2116 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 NKX2-6A6NCS4 301 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 PRSS44E7EML9 344 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 ISG15P05161 165 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 CD2P06729 351 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 RNF224P0DH78 156 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 LAP3P28838 519 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 CSNK1A1P48729 337 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 SELENOPP49908 381 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 ZNF133P52736 654 aaPredicted RBP8.9□□□□□ -0.99
VPS53-202ENST00000389040 KLF9Q13886 244 aaPredicted RBP8.9□□□□□ -0.99
VPS53-202ENST00000389040 TMEM69Q5SWH9 247 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 ASPHD2Q6ICH7 369 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 CORO6Q6QEF8 472 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 SERPINA12Q8IW75 414 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 DMRTC2Q8IXT2 367 aaPredicted RBP8.9□□□□□ -0.99
VPS53-202ENST00000389040 FAM222BQ8WU58 562 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 TMEM54Q969K7 222 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 HAVCR1Q96D42 359 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 C7orf50Q9BRJ6 194 aaKnown RBP8.9□□□□□ -0.99
VPS53-202ENST00000389040 DPAGT1Q9H3H5 408 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 AUNIPQ9H7T9 357 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 PLEKHA1Q9HB21 404 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 NEK6Q9HC98 313 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 G6PC2Q9NQR9 355 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 SLC7A10Q9NS82 523 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 GLTPQ9NZD2 209 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 CKLFQ9UBR5 152 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 CYB5R1Q9UHQ9 305 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 OR52A1Q9UKL2 312 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 FOXJ3Q9UPW0 622 aa8.9□□□□□ -0.99
VPS53-202ENST00000389040 FASNP49327 2511 aaKnown RBP8.89□□□□□ -0.99
VPS53-202ENST00000389040 TENM4Q6N022 2769 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 TMEM269A0A1B0GVZ9 245 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 A0A1W2PPL8 197 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 TUBAL3A6NHL2 446 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 GABARAPH6UMI1 98 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 SULT1B1O43704 296 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 CLDN1O95832 211 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 H2BFMP0C1H6 154 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 ARSBP15848 533 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 ACHEP22303 614 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 GDNFP39905 211 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 PTH2RP49190 550 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 BTG1P62324 171 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 FAPQ12884 760 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 ZFP69Q49AA0 526 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 TIMM23BQ5SRD1 257 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 ZNF704Q6ZNC4 412 aaPredicted RBP8.89□□□□□ -0.99
VPS53-202ENST00000389040 DPPA2Q7Z7J5 298 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.89□□□□□ -0.99
VPS53-202ENST00000389040 OR6N1Q8NGY5 312 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 SLAMF6Q96DU3 332 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 NGBQ9NPG2 151 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 CENPMQ9NSP4 180 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 DDX28Q9NUL7 540 aaKnown RBP8.89□□□□□ -0.99
VPS53-202ENST00000389040 KCNN3Q9UGI6 736 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 HHLA2Q9UM44 414 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 N6AMT1Q9Y5N5 214 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 ARHGAP21Q5T5U3 1957 aa8.89□□□□□ -0.99
VPS53-202ENST00000389040 USP9XQ93008 2570 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 LOC107986453A0A1B0GWG9 222 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 ITGA5P08648 1049 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 UBCP0CG48 685 aaKnown RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 FSTP19883 344 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 IGHV1-2P23083 117 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 IL32P24001 234 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 CDK2P24941 298 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 MNDAP41218 407 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 MMP16P51512 607 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 RAB25P57735 213 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 MRPS10P82664 201 aaKnown RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 FAM27E3Q08E93 113 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 DYRK1AQ13627 763 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 RAB11BQ15907 218 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 BCL2L15Q5TBC7 163 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 CARD17Q5XLA6 110 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 SP5Q6BEB4 398 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 ANKRD16Q6P6B7 361 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 LRFN4Q6PJG9 635 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 BHLHA15Q7RTS1 189 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 CXorf67Q86X51 503 aaPredicted RBP8.88□□□□□ -0.99
VPS53-202ENST00000389040 OR13C3Q8NGS6 347 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 C15orf40Q8WUR7 153 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 DMRTB1Q96MA1 342 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 ULBP2Q9BZM5 246 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 C1orf198Q9H425 327 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 COPZ2Q9P299 210 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 PRSS50Q9UI38 385 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 NUBP2Q9Y5Y2 271 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 CACNA1CQ13936 2221 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 DOCK7Q96N67 2140 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 COL12A1Q99715 3063 aa8.88□□□□□ -0.99
VPS53-202ENST00000389040 CIB4A0PJX0 185 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms