RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 RAP1AP62834 184 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HSD11B2P80365 405 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST2H2BEQ16778 126 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 KHDC3LQ587J8 217 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 PDZD11Q5EBL8 140 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.03□□□□□ -1.44
VPS39-202ENST00000348544 VITQ6UXI7 678 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 LHFPL1Q86WI0 220 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 FAM71E2Q8N5Q1 922 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 FAM160A2Q8N612 972 aaPredicted RBP6.03□□□□□ -1.44
VPS39-202ENST00000348544 NKAIN3Q8N8D7 197 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 OR52N5Q8NH56 324 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 FAM3CQ92520 227 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST1H2BHQ93079 126 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 FGGYQ96C11 551 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 TCTN2Q96GX1 697 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 JSRP1Q96MG2 331 aaPredicted RBP6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST1H2BNQ99877 126 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HIST1H2BMQ99879 126 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 GPR61Q9BZJ8 451 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 SLC35B3Q9H1N7 401 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 SMOC1Q9H4F8 434 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 WFDC1Q9HC57 220 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 HS3ST3B1Q9Y662 390 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 R4GMQ9 66 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 SPACA6W5XKT8 324 aa6.03□□□□□ -1.44
VPS39-202ENST00000348544 A0A1B0GV50 99 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 HIDE1A8MVS5 230 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 TMEM14DPA8MWL7 114 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 SOCS1O15524 211 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 GMFGO60234 142 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 DEDDO75618 318 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 BPNT1O95861 308 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 BGLAPP02818 100 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 ISG15P05161 165 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 PTGER4P35408 488 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 IGFALSP35858 605 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 PPP1CCP36873 323 aaKnown RBP6.02□□□□□ -1.44
VPS39-202ENST00000348544 ZNF84P51523 738 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 RAB1AP62820 205 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 RSU1Q15404 277 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 ACKR1Q16570 336 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 IAH1Q2TAA2 248 aaPredicted RBP6.02□□□□□ -1.44
VPS39-202ENST00000348544 KCTD18Q6PI47 426 aaPredicted RBP6.02□□□□□ -1.44
VPS39-202ENST00000348544 COX15Q7KZN9 410 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 Q7L0L9 218 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 STX12Q86Y82 276 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 HIST3H2BBQ8N257 126 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 KDM8Q8N371 416 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 TMEM156Q8N614 296 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 COMMD1Q8N668 190 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 UBAC2Q8NBM4 344 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 OR10G6Q8NH81 332 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 C16orf52Q8NHV5 167 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 CCL4L1Q8NHW4 92 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 ZNF519Q8TB69 540 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 Q8WTZ3 238 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 RSC1A1Q92681 617 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 RELTQ969Z4 430 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 ADAT3Q96EY9 351 aaPredicted RBP6.02□□□□□ -1.44
VPS39-202ENST00000348544 MISP3Q96FF7 219 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 ZFYVE21Q9BQ24 234 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 G6PC3Q9BUM1 346 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 TGIF2Q9GZN2 237 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 LPAR5Q9H1C0 372 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 SH3BGRL3Q9H299 93 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 Q9N2J8 555 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 FAM212BQ9NTI7 297 aaPredicted RBP6.02□□□□□ -1.44
VPS39-202ENST00000348544 OR52A1Q9UKL2 312 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 OSGIN2Q9Y236 505 aa6.02□□□□□ -1.44
VPS39-202ENST00000348544 PUS1Q9Y606 427 aaKnown RBP eCLIP6.02□□□□□ -1.44
VPS39-202ENST00000348544 MYO7AQ13402 2215 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 BTBD17A6NE02 478 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 ZNF726A6NNF4 738 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 METTL12A8MUP2 240 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 SDCBPO00560 298 aaPredicted RBP6.02□□□□□ -1.45
VPS39-202ENST00000348544 XKRYO14609 159 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 OR6A2O95222 327 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 ADH1CP00326 375 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 F10P00742 488 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 PAX1P15863 534 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 HSD11B1P28845 292 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 CRABP1P29762 137 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 VIPR2P41587 438 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 TMEM50BP56557 158 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 BTG2P78543 158 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 CCINQ13939 588 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 PDGFRLQ15198 375 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 C2orf27AQ580R0 203 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 POMZP3Q6PJE2 187 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 OPN5Q6U736 354 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 HIST2H3AQ71DI3 136 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 ZNF610Q8N9Z0 462 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 HPSE2Q8WWQ2 592 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 MAFIPQ8WZ33 124 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 C1orf147Q96MC9 270 aaPredicted RBP6.02□□□□□ -1.45
VPS39-202ENST00000348544 SPACA5Q96QH8 159 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 CCNL2Q96S94 520 aaPredicted RBP6.02□□□□□ -1.45
VPS39-202ENST00000348544 PRRX2Q99811 253 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 RARRES2Q99969 163 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms