RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 TUSC1Q2TAM9 212 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 PEAR1Q5VY43 1037 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-201ENST00000343916 TMEM41AQ96HV5 264 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 LYZL4Q96KX0 146 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 MS4A7Q9GZW8 240 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-201ENST00000343916 NELFAQ9H3P2 528 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 IFT46Q9NQC8 304 aa17.05■□□□□ 0.32
COL9A3-201ENST00000343916 ZNF107Q9UII5 783 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-201ENST00000343916 MFSD2BA6NFX1 497 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 DISC1C4P0D8 188 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 SOCS1O15524 211 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 C4BPBP20851 252 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 ZP3P21754 424 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 S100A11P31949 105 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 CD96P40200 585 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 MLF1P58340 268 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 GRB2P62993 217 aaKnown RBP17.04■□□□□ 0.32
COL9A3-201ENST00000343916 ENDOGQ14249 297 aaKnown RBP17.04■□□□□ 0.32
COL9A3-201ENST00000343916 HLXQ14774 488 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-201ENST00000343916 PLAC9Q5JTB6 97 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 TMUB2Q71RG4 321 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 STEAP2Q8NFT2 490 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 GPER1Q99527 375 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 SRXN1Q9BYN0 137 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 LGALS8O00214 317 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 CCSO14618 274 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 PPP3CBP16298 524 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 TCEAL6Q6IPX3 200 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 LIN54Q6MZP7 749 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 OR9K2Q8NGE7 335 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 TCEAL3Q969E4 200 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 PGAM5Q96HS1 289 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 C12orf4Q9NQ89 552 aa17.04■□□□□ 0.32
COL9A3-201ENST00000343916 PMS2P1A4D2B8 440 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 HMSDA8MTL9 139 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 NMBP08949 121 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 DBHP09172 617 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 NUP62P37198 522 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-201ENST00000343916 ZXDAP98168 799 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 MEF2DQ14814 521 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 CCDC157Q569K6 752 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 PGAP1Q75T13 922 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 DOK3Q7L591 496 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 OR14K1Q8NGZ2 314 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 NABP1Q96AH0 204 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 PRRT1Q99946 306 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 NOP16Q9Y3C1 178 aaKnown RBP17.03■□□□□ 0.32
COL9A3-201ENST00000343916 TUBAL3A6NHL2 446 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 CDC14BO60729 498 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 PMP2P02689 132 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 CCL1P22362 96 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 OTX2P32243 289 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 LSM6P62312 80 aaKnown RBP17.03■□□□□ 0.32
COL9A3-201ENST00000343916 MPPED2Q15777 294 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 RGS7BPQ6MZT1 257 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-201ENST00000343916 YRDCQ86U90 279 aaKnown RBP17.03■□□□□ 0.32
COL9A3-201ENST00000343916 C1orf210Q8IVY1 113 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 TMEM123Q8N131 208 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 CST11Q9H112 138 aa17.03■□□□□ 0.32
COL9A3-201ENST00000343916 OR2AT4A6NND4 320 aa17.02■□□□□ 0.32
COL9A3-201ENST00000343916 EIF1BO60739 113 aaKnown RBP17.02■□□□□ 0.32
COL9A3-201ENST00000343916 STK17BO94768 372 aa17.02■□□□□ 0.32
COL9A3-201ENST00000343916 CASRP41180 1078 aa17.02■□□□□ 0.32
COL9A3-201ENST00000343916 RSPO1Q2MKA7 263 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-201ENST00000343916 ZIC4Q8N9L1 334 aa17.02■□□□□ 0.32
COL9A3-201ENST00000343916 LHFPL5Q8TAF8 219 aa17.02■□□□□ 0.32
COL9A3-201ENST00000343916 TMEM54Q969K7 222 aa17.02■□□□□ 0.32
COL9A3-201ENST00000343916 TMEM59Q9BXS4 323 aa17.02■□□□□ 0.32
COL9A3-201ENST00000343916 TRAV14DV4A0A0A6YYC5 116 aa17.02■□□□□ 0.31
COL9A3-201ENST00000343916 CRTAPO75718 401 aaPredicted RBP17.02■□□□□ 0.31
COL9A3-201ENST00000343916 CD34P28906 385 aa17.02■□□□□ 0.31
COL9A3-201ENST00000343916 Q0VFX4 171 aa17.02■□□□□ 0.31
COL9A3-201ENST00000343916 PPP1R1AQ13522 171 aa17.02■□□□□ 0.31
COL9A3-201ENST00000343916 C10orf128Q5T292 105 aa17.02■□□□□ 0.31
COL9A3-201ENST00000343916 C1QL2Q7Z5L3 287 aa17.02■□□□□ 0.31
COL9A3-201ENST00000343916 GJC3Q8NFK1 279 aa17.02■□□□□ 0.31
COL9A3-201ENST00000343916 SLC2A8Q9NY64 477 aa17.02■□□□□ 0.31
COL9A3-201ENST00000343916 FBLN5Q9UBX5 448 aa17.02■□□□□ 0.31
COL9A3-201ENST00000343916 DHHO43323 396 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 RP2O75695 350 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 CBR3O75828 277 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 F10P00742 488 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 TMEM50BP56557 158 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 LRRC37A5PQ49AS3 106 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 RAB3CQ96E17 227 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 ARPC5LQ9BPX5 153 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 NCKAP5O14513 1909 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 OR6C65A6NJZ3 312 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 FAHP16930 419 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 CTRB1P17538 263 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 NAT1P18440 290 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 RAC1P63000 192 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 CSNK2A1P68400 391 aaPredicted RBP17.01■□□□□ 0.31
COL9A3-201ENST00000343916 CTRB2Q6GPI1 263 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 ADAD2Q8NCV1 583 aaKnown RBP17.01■□□□□ 0.31
COL9A3-201ENST00000343916 KCNG3Q8TAE7 436 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 ST8SIA4Q92187 359 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 SEC22AQ96IW7 307 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 NECAB3Q96P71 396 aaPredicted RBP17.01■□□□□ 0.31
COL9A3-201ENST00000343916 ULBP2Q9BZM5 246 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms