RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 RAB38P57729 211 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 VRK3Q8IV63 474 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 GALNT16Q8N428 558 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 RDH5Q92781 318 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 GPR137Q96N19 417 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 TBX15Q96SF7 602 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 SMCHD1A6NHR9 2005 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 LMX1BO60663 402 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 GPR75O95800 540 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 FECHP22830 423 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 BMI1P35226 326 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 ASCL1P50553 236 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 SLC26A10Q8NG04 563 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 C2orf50Q96LR7 162 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 PRR14Q9BWN1 585 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 PRSS16Q9NQE7 514 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 ENTPD2Q9Y5L3 495 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 MED19A0JLT2 244 aaPredicted RBP11.69□□□□□ -0.54
USP47-202ENST00000339865 C5orf17Q8NAS9 161 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 NUDT10Q8NFP7 164 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 NUDT11Q96G61 164 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 ADAT1Q9BUB4 502 aaKnown RBP11.69□□□□□ -0.54
USP47-202ENST00000339865 APOOQ9BUR5 198 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 P2RY12Q9H244 342 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 DRGXA6NNA5 263 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 B4E171 279 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 CD14P08571 375 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 SNHG28P0DPA3 235 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 CD70P32970 193 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 UQCRFS1P47985 274 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 OR4S1Q8NGB4 309 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 MYOZ3Q8TDC0 251 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 GPR87Q9BY21 358 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 SLC35B3Q9H1N7 401 aa11.69□□□□□ -0.54
USP47-202ENST00000339865 RCL1Q9Y2P8 373 aaKnown RBP11.69□□□□□ -0.54
USP47-202ENST00000339865 ARHGAP23Q9P227 1491 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 TRAV36DV7A0A075B6V5 113 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 OR2A25A4D2G3 310 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 FAM90A27PA6NNH2 459 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 CD99P14209 185 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 IRS1P35568 1242 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 COX20Q5RI15 118 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 GFRALQ6UXV0 394 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 ZNF738Q8NE65 137 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 OR5M1Q8NGP8 315 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 MMACHCQ9Y4U1 282 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 ABCA4P78363 2273 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 OR2T8A6NH00 312 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 TMX2-CTNND1H3BSU7 103 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 AGBL4Q5VU57 503 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 TMEM65Q6PI78 240 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 DPPA3Q6W0C5 159 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 PHYHIPQ92561 330 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 GALMQ96C23 342 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 TMEM191AQ9H0A3 160 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 TECRQ9NZ01 308 aaKnown RBP11.68□□□□□ -0.54
USP47-202ENST00000339865 COA3Q9Y2R0 106 aaPredicted RBP11.68□□□□□ -0.54
USP47-202ENST00000339865 ZNF737O75373 536 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 ASAH1Q13510 395 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 ZNF260Q3ZCT1 412 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 Q56UQ5 140 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 RTL8AQ9BWD3 113 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 DIMT1Q9UNQ2 313 aaKnown RBP11.68□□□□□ -0.54
USP47-202ENST00000339865 ATRNO75882 1429 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 BCL2L11O43521 198 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 ADPRHP54922 357 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 DHODHQ02127 395 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 TAAR6Q96RI8 345 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 SRPK3Q9UPE1 567 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 CHD1O14646 1710 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.68□□□□□ -0.549e-7■■■■■ 30.7
USP47-202ENST00000339865 TMED7-TICAM2A0A0A6YYA0 188 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 ZC3H12DA2A288 527 aaKnown RBP11.68□□□□□ -0.54
USP47-202ENST00000339865 C5orf49A4QMS7 147 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 CTNSO60931 367 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 PCP4P48539 62 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 TRA2BP62995 288 aaKnown RBP11.68□□□□□ -0.54
USP47-202ENST00000339865 AMMECR1LQ6DCA0 310 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 OR6C1Q96RD1 312 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 TMEM147Q9BVK8 224 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 TMED7Q9Y3B3 224 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 LYZL6O75951 148 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 CA3P07451 260 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 TRMT12Q53H54 448 aaKnown RBP11.68□□□□□ -0.54
USP47-202ENST00000339865 FAM78BQ5VT40 261 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 MED25Q71SY5 747 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 PRSS42Q7Z5A4 293 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 CALHM3Q86XJ0 350 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 C11orf40Q8WZ69 217 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 SLC46A1Q96NT5 459 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 FOXC2Q99958 501 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 DISP1Q96F81 1524 aa11.68□□□□□ -0.54
USP47-202ENST00000339865 SERINC4A6NH21 518 aa11.67□□□□□ -0.54
USP47-202ENST00000339865 RPL30P62888 115 aaKnown RBP11.67□□□□□ -0.54
USP47-202ENST00000339865 Q5PR19 223 aa11.67□□□□□ -0.54
USP47-202ENST00000339865 TMEM81Q6P7N7 255 aa11.67□□□□□ -0.54
USP47-202ENST00000339865 ANKLE1Q8NAG6 615 aa11.67□□□□□ -0.54
USP47-202ENST00000339865 RLN3Q8WXF3 142 aa11.67□□□□□ -0.54
USP47-202ENST00000339865 POLDIP2Q9Y2S7 368 aa11.67□□□□□ -0.54
USP47-202ENST00000339865 GAGE10A6NGK3 116 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms