RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MDFIC2A0A1B0GVS7 189 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 YKT6O15498 198 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 CRYBA1P05813 215 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 SLC25A4P12235 298 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 SLC25A42Q86VD7 318 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 LIPHQ8WWY8 451 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 SIPA1L1O43166 1804 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 ZNF660Q6AZW8 331 aaPredicted RBP17.35■□□□□ 0.37
USP48-201ENST00000308271 LAMTOR1Q6IAA8 161 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 TFAP2EQ6VUC0 442 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 CDH20Q9HBT6 801 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 GCM1Q9NP62 436 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 OR14J1Q9UGF5 321 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 TNFSF18Q9UNG2 199 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 AP4M1O00189 453 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 CISD3P0C7P0 127 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 IL2RGP31785 369 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 LPAR3Q9UBY5 353 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 CKAP5Q14008 2032 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 TBXA2RP21731 343 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 UBE2NP61088 152 aaKnown RBP17.35■□□□□ 0.37
USP48-201ENST00000308271 PRAMEF20Q5VT98 475 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 LILRA6Q6PI73 481 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 CPT1CQ8TCG5 803 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 HPSE2Q8WWQ2 592 aa17.35■□□□□ 0.37
USP48-201ENST00000308271 JMJD7P0C870 316 aa17.34■□□□□ 0.37
USP48-201ENST00000308271 CDC20BQ86Y33 519 aa17.34■□□□□ 0.37
USP48-201ENST00000308271 POC1BQ8TC44 478 aa17.34■□□□□ 0.37
USP48-201ENST00000308271 RLN3Q8WXF3 142 aa17.34■□□□□ 0.37
USP48-201ENST00000308271 ZNF775Q96BV0 537 aaPredicted RBP17.34■□□□□ 0.37
USP48-201ENST00000308271 A0A0B4J293 547 aa17.34■□□□□ 0.37
USP48-201ENST00000308271 A0A1B0GX78 115 aa17.34■□□□□ 0.37
USP48-201ENST00000308271 VSIG10L2P0DP72 767 aa17.34■□□□□ 0.37
USP48-201ENST00000308271 PPP2CBP62714 309 aa17.34■□□□□ 0.37
USP48-201ENST00000308271 PPP2CAP67775 309 aa17.34■□□□□ 0.37
USP48-201ENST00000308271 SRYQ05066 204 aa17.34■□□□□ 0.37
USP48-201ENST00000308271 SCAF4O95104 1147 aaKnown RBP17.33■□□□□ 0.37
USP48-201ENST00000308271 VAMP5O95183 116 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 POU3F2P20265 443 aaPredicted RBP17.33■□□□□ 0.37
USP48-201ENST00000308271 ABCD3P28288 659 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 CRYBA2P53672 197 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 BAXQ07812 192 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 ZXDCQ2QGD7 858 aaPredicted RBP17.33■□□□□ 0.37
USP48-201ENST00000308271 RPL7L1Q6DKI1 246 aaKnown RBP17.33■□□□□ 0.37
USP48-201ENST00000308271 BRICD5Q6PL45 260 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 MAML2Q8IZL2 1156 aaPredicted RBP17.33■□□□□ 0.37
USP48-201ENST00000308271 C11orf40Q8WZ69 217 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 PLEKHF2Q9H8W4 249 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 COL11A1P12107 1806 aaPredicted RBP17.33■□□□□ 0.37
USP48-201ENST00000308271 TRAV8-7A0A075B6U6 113 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 M0R135 149 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 SSSCA1O60232 199 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 SPP1P10451 314 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 ZNF121P58317 390 aaPredicted RBP17.33■□□□□ 0.37
USP48-201ENST00000308271 LCN15Q6UWW0 184 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 ETFBKMTQ8IXQ9 262 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 ZNF799Q96GE5 643 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 TRAPPC2LQ9UL33 140 aa17.33■□□□□ 0.37
USP48-201ENST00000308271 PTP4A3O75365 173 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 PPP1R35Q8TAP8 253 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 MITD1Q8WV92 249 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 WFDC6Q9BQY6 131 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 ICAM5Q9UMF0 924 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 ANKRD31Q8N7Z5 1873 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 A0A1W2PPV9 198 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 HSPB6O14558 160 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 ZGLP1P0C6A0 271 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 C4orf17Q53FE4 359 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 OR10D4PQ8NGN7 298 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 MVB12AQ96EY5 273 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 PGLYRP3Q96LB9 341 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 FBXL17Q9UF56 701 aa17.33■□□□□ 0.36
USP48-201ENST00000308271 RBBP6Q7Z6E9 1792 aaKnown RBP17.33■□□□□ 0.36
USP48-201ENST00000308271 HSBP1L1C9JCN9 74 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 PHOX2AO14813 284 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 FAM185AQ8N0U4 392 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 MOGAT1Q96PD6 335 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 SERTAD4Q9NUC0 356 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 MMP24Q9Y5R2 645 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 NSG1A0A0A6YYJ2 146 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 NXPH3O95157 252 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 GPANK1O95872 356 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 LINC00518Q8N0U6 118 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 GVQW1Q8N7I0 195 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 UHRF2Q96PU4 802 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 NRTNQ99748 197 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 PIGQQ9BRB3 760 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 TIMM8BQ9Y5J9 83 aaPredicted RBP17.32■□□□□ 0.36
USP48-201ENST00000308271 CT62P0C5K7 136 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 GGTLC2Q14390 218 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.32■□□□□ 0.36
USP48-201ENST00000308271 LHX8Q68G74 356 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 PP6455Q8WZ26 134 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 TMEM18Q96B42 140 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 NTNG2Q96CW9 530 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 PIK3IP1Q96FE7 263 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 EDEM2Q9BV94 578 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 CHST6Q9GZX3 395 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 ARV1Q9H2C2 271 aa17.32■□□□□ 0.36
USP48-201ENST00000308271 PTRH2Q9Y3E5 179 aaKnown RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 149.9 ms