RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 UBAC2Q8NBM4 344 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 SGMS2Q8NHU3 365 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 PAQR8Q8TEZ7 354 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 MBD3L1Q8WWY6 194 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 EDARADDQ8WWZ3 215 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 KLK6Q92876 244 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 NSUN5Q96P11 429 aaKnown RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 C19orf24Q9BVV8 132 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 BEX2Q9BXY8 128 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 AUNIPQ9H7T9 357 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 BEX1Q9HBH7 125 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 V9GYH0 126 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM238LA0A1B0GVL6 79 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM150BA6NC51 233 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 FBLL1A6NHQ2 334 aaKnown RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 A6NJY4 79 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CBR3O75828 277 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 FUT1P19526 365 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 POU3F2P20265 443 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 HINT1P49773 126 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 RBP2P50120 134 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 DUSP5Q16690 384 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 FAM209AQ5JX71 171 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 LYPD8Q6UX82 237 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 OR51S1Q8NGJ8 323 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 SFT2D1Q8WV19 159 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ZIC5Q96T25 663 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 TEAD3Q99594 435 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 LHX3Q9UBR4 397 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 YBX2Q9Y2T7 364 aaKnown RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 FOCADQ5VW36 1801 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CD8B2A6NJW9 211 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM250H0YL14 139 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 H3BVH4 76 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CLDN5O00501 218 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 OGG1O15527 345 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CTSVO60911 334 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CTSDP07339 412 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CFPP27918 469 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CSF2RBP32927 897 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 UBE2IP63279 158 aaKnown RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CSNK1G2P78368 415 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 HHEXQ03014 270 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 MGAT3Q09327 533 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 COL9A3Q14050 684 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 HLXQ14774 488 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CXCL17Q6UXB2 119 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 TOX2Q96NM4 488 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 FOXN4Q96NZ1 517 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 DEFB118Q96PH6 123 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 OSGIN2Q9Y236 505 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 AUP1Q9Y679 476 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF860A6NHJ4 632 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 H0YIG0 161 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF264O43296 627 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CLDN7O95471 211 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ARNTP27540 789 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 OR3A1P47881 315 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 HTR6P50406 440 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ERHP84090 104 aaKnown RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 TCTN1Q2MV58 587 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 IAH1Q2TAA2 248 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ACOT4Q8N9L9 421 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 S1PR5Q9H228 398 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ELOVL3Q9HB03 270 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 NOX4Q9NPH5 578 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 UQCC1Q9NVA1 299 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 RHCGQ9UBD6 479 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 INSL6Q9Y581 213 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 A6NL46 340 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 HIDE1A8MVS5 230 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 F5H697 171 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 H3BNC9 293 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 UBE2L6O14933 153 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 LRP3O75074 770 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 MAS1P04201 325 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 GJA4P35212 333 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 THBS4P35443 961 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 BSGP35613 385 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ARF6P62330 175 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SLC22A6Q4U2R8 563 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 LINC00518Q8N0U6 118 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 C17orf47Q8NEP4 570 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 CAPNS2Q96L46 248 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 KLF16Q9BXK1 252 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 NAA50Q9GZZ1 169 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 TRAPPC2LQ9UL33 140 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 LRRC37AA6NMS7 1700 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 COL16A1Q07092 1604 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 AQP7O14520 342 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 RPL12P30050 165 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 BEX3Q00994 111 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF154Q13106 437 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 FAM53BQ14153 422 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 OR1Q1Q15612 314 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 IGFBP7Q16270 282 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 EXT1Q16394 746 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 NKAIN1Q4KMZ8 207 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SPRYD7Q5W111 196 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms