RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SAMD4AQ9UPU9 718 aaKnown RBP12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 NBEAL2Q6ZNJ1 2754 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 OR6C68A6NDL8 312 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 NME4O00746 187 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 FCN3O75636 299 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 ACSM1Q08AH1 577 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 SNCBQ16143 134 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 NCR3LG1Q68D85 454 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 C8orf82Q6P1X6 216 aaPredicted RBP12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 DPY19L4Q7Z388 723 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 OR52J3Q8NH60 311 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 LRRC29Q8WV35 223 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 PPP1R14AQ96A00 147 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 C7orf34Q96L11 122 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 FUZQ9BT04 418 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 COPS4Q9BT78 406 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 FAM234AQ9H0X4 552 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 DNTTIP1Q9H147 329 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 SP140LQ9H930 580 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 EFCAB1Q9HAE3 211 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 RAB18Q9NP72 206 aa12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 MRPL22Q9NWU5 206 aaKnown RBP12.13□□□□□ -0.47
CCDC88B-201ENST00000301897 IGHV3OR15-7A0A075B7D8 119 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 PIN1P1O15428 100 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 GMNNO75496 209 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 COX4I1P13073 169 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 CFL1P23528 166 aaKnown RBP12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 UBE2E1P51965 193 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 TAF13Q15543 124 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 WDR38Q5JTN6 314 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 ATPAF1Q5TC12 328 aaPredicted RBP12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 HACD2Q6Y1H2 254 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 SDR9C7Q8NEX9 313 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 PROKR2Q8NFJ6 384 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 OR2T4Q8NH00 348 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 C8orf46Q8TAG6 207 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 SPSB4Q96A44 273 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 CCL13Q99616 98 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 DCTN5Q9BTE1 182 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 SIRT7Q9NRC8 400 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 DCAF13Q9NV06 445 aaKnown RBP12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 CD300AQ9UGN4 299 aa12.12□□□□□ -0.47
CCDC88B-201ENST00000301897 MEIOCA2RUB1 952 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 G3V4G9 280 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 M0R1W7 72 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 GADD45GO95257 159 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 APOC1P02654 83 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 NCK1P16333 377 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 SAA4P35542 130 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 SLC15A1P46059 708 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 POU4F2Q12837 409 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 BLMHQ13867 455 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 SAMD5Q5TGI4 173 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 HIST2H2BDQ6DRA6 164 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 SLC35E4Q6ICL7 350 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 RPL13AP3Q6NVV1 102 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 PGBD2Q6P3X8 592 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 DCXRQ7Z4W1 244 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 ZDHHC21Q8IVQ6 265 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 LNX2Q8N448 690 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 FTMTQ8N4E7 242 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 CYB561A3Q8NBI2 242 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 OR52L1Q8NGH7 329 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 OR4C13Q8NGP0 309 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 MED30Q96HR3 178 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 KCNJ15Q99712 375 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 SEMA6AQ9H2E6 1030 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 PPA2Q9H2U2 334 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 FN3KQ9H479 309 aa12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 METTL8Q9H825 291 aaKnown RBP12.11□□□□□ -0.47
CCDC88B-201ENST00000301897 NKX6-3A6NJ46 265 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 ZNF878C9JN71 531 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 GNALP38405 381 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 KIR2DS4P43632 304 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 GSSP48637 474 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 TGM4P49221 684 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 PRKXP51817 358 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 GRB2P62993 217 aaKnown RBP12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 SPIBQ01892 262 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 IKZF1Q13422 519 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 WDR82Q6UXN9 313 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 C11orf53Q8IXP5 236 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 FAM216BQ8N7L0 139 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 Q8N7P7 452 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 BEND2Q8NDZ0 799 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 OR1M1Q8NGA1 313 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 OR9Q1Q8NGQ5 310 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 OR2T6Q8NHC8 308 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 RANBP3Q9H6Z4 567 aaPredicted RBP12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 ABCB9Q9NP78 766 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 DNAJB11Q9UBS4 358 aa12.1□□□□□ -0.47
CCDC88B-201ENST00000301897 ACOT8O14734 319 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 XPNPEP2O43895 674 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 DIRAS1O95057 198 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 FMO3P31513 532 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 PYCR1P32322 319 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 ENTPD1P49961 510 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 EFNB2P52799 333 aa12.09□□□□□ -0.47
CCDC88B-201ENST00000301897 IL5RAQ01344 420 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms