RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 PHYHD1Q5SRE7 291 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 TCTN3Q6NUS6 607 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 MEX3DQ86XN8 651 aaKnown RBP11.54□□□□□ -0.56
USP40-201ENST00000251722 SCCPDHQ8NBX0 429 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 EDARADDQ8WWZ3 215 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 GCM1Q9NP62 436 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 EXOSC3Q9NQT5 275 aaKnown RBP11.54□□□□□ -0.56
USP40-201ENST00000251722 SLCO1C1Q9NYB5 712 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 BTG2P78543 158 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 RHBDD2Q6NTF9 364 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 SLC24A4Q8NFF2 622 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 C4orf17Q53FE4 359 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 GUSBP11Q6P575 273 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 SIGLECL1Q8N7X8 197 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 FOXN4Q96NZ1 517 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 AMDHD2Q9Y303 409 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 ECM29Q5VYK3 1845 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 GRPP07492 148 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 PRF1P14222 555 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 SRD5A2P31213 254 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 ZNF136P52737 540 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 ANKRD37Q7Z713 158 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 NUBPLQ8TB37 319 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 C8orf44Q96CB5 159 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 MED20Q9H944 212 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 COL5A3P25940 1745 aaPredicted RBP11.53□□□□□ -0.56
USP40-201ENST00000251722 GABRB1P18505 474 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 AKR1C1Q04828 323 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 RPL18Q07020 188 aaKnown RBP11.53□□□□□ -0.56
USP40-201ENST00000251722 MDGA2Q7Z553 956 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 NANOGP1Q8N7R0 232 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 PFN4Q8NHR9 129 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 HSD17B8Q92506 261 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 ZC3HAV1LQ96H79 300 aaKnown RBP11.53□□□□□ -0.56
USP40-201ENST00000251722 MYOZ1Q9NP98 299 aaPredicted RBP11.53□□□□□ -0.56
USP40-201ENST00000251722 DBX1A6NMT0 343 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 SOCS6O14544 535 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 TUSC2O75896 110 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 HLA-HP01893 362 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 GLRA1P23415 457 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 THBS4P35443 961 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 PGFP49763 221 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 HES1Q14469 280 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 ACOT6Q3I5F7 207 aaPredicted RBP11.53□□□□□ -0.56
USP40-201ENST00000251722 OR2G6Q5TZ20 316 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 LGALS14Q8TCE9 139 aa11.53□□□□□ -0.56
USP40-201ENST00000251722 PARD6GQ9BYG4 376 aaPredicted RBP11.53□□□□□ -0.56
USP40-201ENST00000251722 ZNF816-ZNF321PA0A0X1KG74 233 aa11.52□□□□□ -0.56
USP40-201ENST00000251722 ZNF354AO60765 605 aaPredicted RBP11.52□□□□□ -0.56
USP40-201ENST00000251722 FBXO24O75426 580 aa11.52□□□□□ -0.56
USP40-201ENST00000251722 HOXD4P09016 255 aaPredicted RBP11.52□□□□□ -0.56
USP40-201ENST00000251722 CD80P33681 288 aa11.52□□□□□ -0.56
USP40-201ENST00000251722 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.52□□□□□ -0.56
USP40-201ENST00000251722 CST9LP1Q5W188 147 aa11.52□□□□□ -0.56
USP40-201ENST00000251722 ZNF738Q8NE65 137 aa11.52□□□□□ -0.56
USP40-201ENST00000251722 RBMXL1Q96E39 390 aaKnown RBP11.52□□□□□ -0.56
USP40-201ENST00000251722 MFRPQ9BY79 579 aa11.52□□□□□ -0.56
USP40-201ENST00000251722 ZFP64Q9NPA5 681 aa11.52□□□□□ -0.56
USP40-201ENST00000251722 STRAPQ9Y3F4 350 aaKnown RBP11.52□□□□□ -0.56
USP40-201ENST00000251722 SNRPGP15A8MWD9 76 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 NRASP01111 189 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 GP2P55259 537 aaKnown RBP11.52□□□□□ -0.57
USP40-201ENST00000251722 RPS25P62851 125 aaKnown RBP11.52□□□□□ -0.57
USP40-201ENST00000251722 ZXDAP98168 799 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 HES3Q5TGS1 186 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 SECTM1Q8WVN6 248 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 APOBEC4Q8WW27 367 aaKnown RBP11.52□□□□□ -0.57
USP40-201ENST00000251722 C20orf27Q9GZN8 174 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 SCN4AP35499 1836 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 LOC107986453A0A1B0GWG9 222 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 M0QZ24 198 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 CRYBA1P05813 215 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 GDNFP39905 211 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 ATP6V1FQ16864 119 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 BTLAQ7Z6A9 289 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 FAM71CQ8NEG0 241 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 OR11G2Q8NGC1 345 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 ZNF552Q9H707 407 aaPredicted RBP11.52□□□□□ -0.57
USP40-201ENST00000251722 GSN-AS1Q9NRJ2 163 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 ZNF275Q9NSD4 429 aaPredicted RBP11.52□□□□□ -0.57
USP40-201ENST00000251722 PCDHGA9Q9Y5G4 932 aaKnown RBP11.52□□□□□ -0.57
USP40-201ENST00000251722 URGCP-MRPS24S4R325 110 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 PEX11BO96011 259 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 ACAA1P09110 424 aaPredicted RBP11.52□□□□□ -0.57
USP40-201ENST00000251722 DEFA4P12838 97 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 FUT6P51993 359 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 FAM162BQ5T6X4 162 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 STEAP1BQ6NZ63 245 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 TEX29Q8N6K0 151 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 ZNF511Q8NB15 262 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 PP6455Q8WZ26 134 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 SEH1LQ96EE3 360 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 ARHGDIGQ99819 225 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 PRDM7Q9NQW5 492 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 GPR173Q9NS66 373 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 CYSLTR2Q9NS75 346 aa11.52□□□□□ -0.57
USP40-201ENST00000251722 LOC102724200A0A096LPH7 203 aaPredicted RBP11.51□□□□□ -0.57
USP40-201ENST00000251722 OR8U8P0C7N1 319 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 IL9P15248 144 aa11.51□□□□□ -0.57
USP40-201ENST00000251722 MEOX1P50221 254 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms