RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ZNF79Q15937 498 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 RGS21Q2M5E4 152 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 LINC00303Q3SY05 128 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 TBRG1Q3YBR2 411 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 C1orf100Q5SVJ3 147 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 ASPHD2Q6ICH7 369 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 PLXDC2Q6UX71 529 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 FAM131AQ6UXB0 335 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 CNEP1R1Q8N9A8 125 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 KDF1Q8NAX2 398 aaPredicted RBP9.21□□□□□ -0.94
CLN3-248ENST00000636355 OR1M1Q8NGA1 313 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 OR14K1Q8NGZ2 314 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 APOBEC3DQ96AK3 386 aaPredicted RBP9.21□□□□□ -0.94
CLN3-248ENST00000636355 SPSB1Q96BD6 273 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 SRRQ9GZT4 340 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 PIGMQ9H3S5 423 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 TAS2R4Q9NYW5 299 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 FBLN5Q9UBX5 448 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 AMDHD2Q9Y303 409 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 AK6Q9Y3D8 172 aaKnown RBP9.21□□□□□ -0.94
CLN3-248ENST00000636355 CHD8Q9HCK8 2581 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 A0A0A6YYH2 397 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 LOC100289279A0A1B0GTE1 492 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 A6NJ64 397 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 TBX1O43435 398 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 PTTG1O95997 202 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 HLA-HP01893 362 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 DBHP09172 617 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 UBBP0CG47 229 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 SLC2A1P11166 492 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 ELK1P19419 428 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 IGHV1-2P23083 117 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 TUBG1P23258 451 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 STOMP27105 288 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 HTR2CP28335 458 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 APLNRP35414 380 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 MAP2K3P46734 347 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 UBE2NP61088 152 aaKnown RBP9.2□□□□□ -0.94
CLN3-248ENST00000636355 RAB1AP62820 205 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 PITPNAQ00169 270 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 MRPL49Q13405 166 aaKnown RBP9.2□□□□□ -0.94
CLN3-248ENST00000636355 C3orf36Q3SXR2 165 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 SFRP5Q5T4F7 317 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 RTL6Q6ICC9 239 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 PYHIN1Q6K0P9 492 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 UNQ6126/PRO20091Q6UXV3 157 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 SEM1Q6ZVN7 128 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 KRT74Q7RTS7 529 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 LYPD6Q86Y78 171 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 C1orf174Q8IYL3 243 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 FTMTQ8N4E7 242 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 AKR7LQ8NHP1 331 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 CHPT1Q8WUD6 406 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 ADAT3Q96EY9 351 aaPredicted RBP9.2□□□□□ -0.94
CLN3-248ENST00000636355 REEP6Q96HR9 211 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 POM121L2Q96KW2 1035 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 PRORYQ9H606 182 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 PPP1R3EQ9H7J1 279 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 TUBG2Q9NRH3 451 aa9.2□□□□□ -0.94
CLN3-248ENST00000636355 RP1L1Q8IWN7 2480 aaPredicted RBP9.2□□□□□ -0.94
CLN3-248ENST00000636355 ZGRF1Q86YA3 2104 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 hCG_38984A0A1B0GV85 526 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 FAM25AB3EWG3 89 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 FAM25CB3EWG5 89 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 FAM25GB3EWG6 89 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 MSTNO14793 375 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 CTDSPLO15194 276 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 MAGEB3O15480 346 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 BPNT1O95861 308 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 LCATP04180 440 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 MAS1P04201 325 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 EIF4EP06730 217 aaKnown RBP9.19□□□□□ -0.94
CLN3-248ENST00000636355 SLC2A2P11168 524 aaPredicted RBP9.19□□□□□ -0.94
CLN3-248ENST00000636355 CD79AP11912 226 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 PRF1P14222 555 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 RAB6AP20340 208 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 PSMB1P20618 241 aaKnown RBP9.19□□□□□ -0.94
CLN3-248ENST00000636355 OPRM1P35372 400 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 MAGEB1P43366 347 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 PITPNBP48739 271 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 ART1P52961 327 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 HGFACQ04756 655 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 RIPPLY1Q0D2K3 151 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 MALLQ13021 153 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 CNN3Q15417 329 aaKnown RBP9.19□□□□□ -0.94
CLN3-248ENST00000636355 GABRA6Q16445 453 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 TBC1D28Q2M2D7 210 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 SNAI3Q3KNW1 292 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 TMEM42Q69YG0 159 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 VWA1Q6PCB0 445 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 GFRALQ6UXV0 394 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 BTLAQ7Z6A9 289 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 LYSMD2Q8IV50 215 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 CPEB3Q8NE35 698 aaKnown RBP9.19□□□□□ -0.94
CLN3-248ENST00000636355 SEMA6DQ8NFY4 1073 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 OR5L1Q8NGL2 311 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 FGFBP3Q8TAT2 258 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 SSC4DQ8WTU2 575 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 PPP1R14AQ96A00 147 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 FGGYQ96C11 551 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms