RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 RWDD4Q6NW29 188 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PMF1Q6P1K2 205 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CNIH2Q6PI25 160 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CLEC18BQ6UXF7 455 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 C16orf47Q6ZP98 133 aaPredicted RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 Q6ZSR6 202 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PGAP1Q75T13 922 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 NT5DC3Q86UY8 548 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 HORMAD1Q86X24 394 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 GRAMD2AQ8IUY3 354 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CD302Q8IX05 232 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF683Q8IZ20 524 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 H1FOOQ8IZA3 346 aaPredicted RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RDH10Q8IZV5 341 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 TMEM123Q8N131 208 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 C6orf223Q8N319 242 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 C2orf73Q8N5S3 287 aaPredicted RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 LRRC52Q8N7C0 313 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 FADS6Q8N9I5 356 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 NKAPP1Q8N9T2 125 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 WFDC11Q8NEX6 87 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 FDCSPQ8NFU4 85 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR4F15Q8NGB8 312 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR10G3Q8NGC4 313 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR52H1Q8NGJ2 320 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR1N2Q8NGR9 330 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR2T34Q8NGX1 318 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR1F12Q8NHA8 337 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF596Q8TC21 504 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RNF139Q8WU17 664 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR8D1Q8WZ84 308 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PSMF1Q92530 271 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 EFHD2Q96C19 240 aaPredicted RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 C8orf44Q96CB5 159 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RBMXL1Q96E39 390 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 MSANTD3Q96H12 275 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 TIMD4Q96H15 378 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ITCHQ96J02 903 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 FCRL1Q96LA6 429 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 LINC00477Q96M19 166 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 AMDHD1Q96NU7 426 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 MCEEQ96PE7 176 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 XPO6Q96QU8 1125 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR2M4Q96R27 311 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CCNL2Q96S94 520 aaPredicted RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RNF2Q99496 336 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ECSITQ9BQ95 431 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ACBD6Q9BR61 282 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 TUBGCP2Q9BSJ2 902 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 NDFIP1Q9BT67 221 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 SNRNP25Q9BV90 132 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 MRPL13Q9BYD1 178 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 KRTAP4-1Q9BYQ7 146 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RAB34Q9BZG1 259 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ULBP3Q9BZM4 244 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 TPK1Q9H3S4 243 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 LRRN3Q9H3W5 708 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RIBC2Q9H4K1 309 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 FAM96AQ9H5X1 160 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 XKR8Q9H6D3 395 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 NHEJ1Q9H9Q4 299 aaPredicted RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 MEAF6Q9HAF1 191 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 IL26Q9NPH9 171 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 POLE3Q9NRF9 147 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 GLRX2Q9NS18 164 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CISHQ9NSE2 258 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 IMP3Q9NV31 184 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ETNK2Q9NVF9 386 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 NECAP2Q9NVZ3 263 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 QPCTLQ9NXS2 382 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF226Q9NYT6 803 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 TAS2R3Q9NYW6 316 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 C6orf203Q9P0P8 240 aaPredicted RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 UXTQ9UBK9 157 aaPredicted RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 DHCR7Q9UBM7 475 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CTSFQ9UBX1 484 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CHRNA9Q9UGM1 479 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PCSK1NQ9UHG2 260 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 LAMP5Q9UJQ1 280 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF835Q9Y2P0 537 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 MEMO1Q9Y316 297 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 HYOU1Q9Y4L1 999 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 AP1M2Q9Y6Q5 423 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 VPS13CQ709C8 3753 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 STAB1Q9NY15 2570 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 FBN3Q75N90 2809 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ZANQ9Y493 2812 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 NBEAL1Q6ZS30 2694 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CELSR2Q9HCU4 2923 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 SETD2Q9BYW2 2564 aaPredicted RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 SVEP1Q4LDE5 3571 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CMYA5Q8N3K9 4069 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 MUC4Q99102 2169 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 ATRQ13535 2644 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 IGLV11-55A0A075B6I3 123 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 IGHV5-51A0A0C4DH38 117 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 KIR2DL5BA0A0G2JN68 375 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 KIR2DL5BA0A0G2JPC4 375 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 IGHV3-64DA0A0J9YX35 117 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 SPTY2D1-AS1A0A0U1RR47 76 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms