RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 UTS2O95399 124 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 CLPSP04118 112 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 CXCR1P25024 350 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 GJA4P35212 333 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 GNALP38405 381 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 OR2B11Q5JQS5 317 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 VAX1Q5SQQ9 334 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 ZNF776Q68DI1 518 aaPredicted RBP12.55□□□□□ -0.4
LDB3-209ENST00000623056 OR2A2Q6IF42 318 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 MAMDC2Q7Z304 686 aaPredicted RBP12.55□□□□□ -0.4
LDB3-209ENST00000623056 GKN2Q86XP6 184 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 FOXRED2Q8IWF2 684 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 SLC22A24Q8N4F4 322 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 ARRDC1Q8N5I2 433 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 KDF1Q8NAX2 398 aaPredicted RBP12.55□□□□□ -0.4
LDB3-209ENST00000623056 LYPD6BQ8NI32 183 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 PHOSPHO2Q8TCD6 241 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 PARP12Q9H0J9 701 aaKnown RBP12.55□□□□□ -0.4
LDB3-209ENST00000623056 HRASLS2Q9NWW9 162 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 COA3Q9Y2R0 106 aaPredicted RBP12.55□□□□□ -0.4
LDB3-209ENST00000623056 STARD10Q9Y365 291 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 WISP1O95388 367 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 RD3LP0DJH9 198 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 CLDN6P56747 220 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 GLO1Q04760 184 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 TOMM34Q15785 309 aaPredicted RBP12.55□□□□□ -0.4
LDB3-209ENST00000623056 SGCBQ16585 318 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 ADAM5Q6NVV9 412 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 COX15Q7KZN9 410 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 DCXRQ7Z4W1 244 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 LINC00346Q8IVM7 164 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 ARHGEF39Q8N4T4 335 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 FAM24BQ8N5W8 94 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 RTN4RQ9BZR6 473 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 TXNIPQ9H3M7 391 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 ANAPC10Q9UM13 185 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 SLC5A6Q9Y289 635 aa12.55□□□□□ -0.4
LDB3-209ENST00000623056 A0A0A6YYD4 124 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 ZNF729A6NN14 1252 aaPredicted RBP12.54□□□□□ -0.4
LDB3-209ENST00000623056 C17orf51A8MQB3 221 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 ZNF217O75362 1048 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 HOXB5P09067 269 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 FPR2P25090 351 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 RABIFP47224 123 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 EMP2P54851 167 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 NFATC4Q14934 902 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 NCMAPQ5T1S8 102 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 PPP1R3BQ86XI6 285 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 ANGPTL5Q86XS5 388 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 RELTQ969Z4 430 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 ADAT3Q96EY9 351 aaPredicted RBP12.54□□□□□ -0.4
LDB3-209ENST00000623056 CYYR1Q96J86 154 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 NUDT16L1Q9BRJ7 211 aaKnown RBP12.54□□□□□ -0.4
LDB3-209ENST00000623056 GGACTQ9BVM4 153 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 SPACA1Q9HBV2 294 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 FBXL17Q9UF56 701 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 DMRT1Q9Y5R6 373 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 ARID1AO14497 2285 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 TMEM14DPA8MWL7 114 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 IL33O95760 270 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 TSPAN15O95858 294 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 ARG1P05089 322 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 SFTPBP07988 381 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 ZNF708P17019 499 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 SNCAP37840 140 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 HTR5AP47898 357 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 ZNF117Q03924 483 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 SPEM2Q0P670 501 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 PEG10Q86TG7 708 aaKnown RBP12.54□□□□□ -0.4
LDB3-209ENST00000623056 KDM8Q8N371 416 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 MALSU1Q96EH3 234 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 WDR92Q96MX6 357 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 SLC2A4RGQ9NR83 387 aa12.54□□□□□ -0.4
LDB3-209ENST00000623056 C5orf67F2Z3F1 127 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 SOX1O00570 391 aaPredicted RBP12.53□□□□□ -0.4
LDB3-209ENST00000623056 RPL12P30050 165 aaKnown RBP12.53□□□□□ -0.4
LDB3-209ENST00000623056 P2RY4P51582 365 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 ACTBL2Q562R1 376 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 C9orf152Q5JTZ5 239 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 SFTPA2Q8IWL1 248 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 ZNF101Q8IZC7 436 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 OR9K2Q8NGE7 335 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 ST7LQ8TDW4 575 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 SCRT1Q9BWW7 348 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 RAB33BQ9H082 229 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 PRODH2Q9UF12 536 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 MEMO1Q9Y316 297 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 K7EPK0 472 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 CLDN4O14493 209 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 HCRTR2O43614 444 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 JTBO76095 146 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 SLC34A2O95436 690 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 GAPDHP04406 335 aaKnown RBP12.53□□□□□ -0.4
LDB3-209ENST00000623056 RPS2P15880 293 aaKnown RBP12.53□□□□□ -0.4
LDB3-209ENST00000623056 SULT1A1P50225 295 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 RAB2AP61019 212 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 GUK1Q16774 197 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 MIDNQ504T8 468 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 PLAC9Q5JTB6 97 aa12.53□□□□□ -0.4
LDB3-209ENST00000623056 Q7L0L9 218 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms