RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 DHRS13Q6UX07 377 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 ZBTB44Q8NCP5 570 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 C15orf40Q8WUR7 153 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 ZNF845Q96IR2 970 aaPredicted RBP9.36□□□□□ -0.91
CUX1-221ENST00000622516 PIGQQ9BRB3 760 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 SELENOIQ9C0D9 397 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 KLK13Q9UKR3 277 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 A0A087WZY1 265 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 G3V3Q6 166 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 RAB27BO00194 218 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 LDLRAD4O15165 306 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 TGM6O95932 706 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 AMY2AP04746 511 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 S100A6P06703 90 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 HCKP08631 526 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 AKAIN1P0CW23 69 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 ZNF81P51508 661 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 SCAND1P57086 179 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 RAC1P63000 192 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 LGALSLQ3ZCW2 172 aaPredicted RBP9.36□□□□□ -0.91
CUX1-221ENST00000622516 C1orf100Q5SVJ3 147 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 SFXN2Q96NB2 322 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 ULBP2Q9BZM5 246 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 EXO5Q9H790 373 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 PLA2G3Q9NZ20 509 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 A0A1B0GUH1 482 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CDX4O14627 284 aaPredicted RBP9.35□□□□□ -0.91
CUX1-221ENST00000622516 CREBL2O60519 120 aaPredicted RBP9.35□□□□□ -0.91
CUX1-221ENST00000622516 RAB3DO95716 219 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CYC1P08574 325 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 GABRA1P14867 456 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 MSR1P21757 451 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CFPP27918 469 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CLDN15P56746 228 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CARD18P57730 90 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 B3GALT5-AS1P59052 145 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 ENDOGQ14249 297 aaKnown RBP9.35□□□□□ -0.91
CUX1-221ENST00000622516 RBMS2Q15434 407 aaKnown RBP9.35□□□□□ -0.91
CUX1-221ENST00000622516 RSPO1Q2MKA7 263 aaPredicted RBP9.35□□□□□ -0.91
CUX1-221ENST00000622516 GLIPR1L1Q6UWM5 242 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 IDO2Q6ZQW0 420 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CCDC28AQ8IWP9 274 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 PSMF1Q92530 271 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 FBXO17Q96EF6 278 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 PGAM5Q96HS1 289 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CITED4Q96RK1 184 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 GPER1Q99527 375 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 GON7Q9BXV9 100 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 RANBP3Q9H6Z4 567 aaPredicted RBP9.35□□□□□ -0.91
CUX1-221ENST00000622516 CRLF2Q9HC73 371 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 NPDC1Q9NQX5 325 aaPredicted RBP9.35□□□□□ -0.91
CUX1-221ENST00000622516 PLEK2Q9NYT0 353 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 KCNN3Q9UGI6 736 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 FBXO4Q9UKT5 387 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 LOC390937A0A1W2PQ73 354 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 LRRC3CA6NJW4 275 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 ERVH48-1M5A8F1 160 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 DHHO43323 396 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 MPIG6BO95866 241 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CYB5AP00167 134 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 LPLP06858 475 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CELA3AP09093 270 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 GDF1P27539 372 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 FAUP35544 74 aaKnown RBP9.35□□□□□ -0.91
CUX1-221ENST00000622516 DLSTP36957 453 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CYB561P49447 251 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CDNFQ49AH0 187 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 SFRP5Q5T4F7 317 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 LINC00696Q6ZRV3 163 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 TMEM123Q8N131 208 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 MUC20Q8N307 709 aaPredicted RBP9.35□□□□□ -0.91
CUX1-221ENST00000622516 SLC22A24Q8N4F4 322 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 NAXEQ8NCW5 288 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 LYZL4Q96KX0 146 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 SGCZQ96LD1 299 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 MICU1Q9BPX6 476 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 STRADBQ9C0K7 418 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 NELFAQ9H3P2 528 aa9.35□□□□□ -0.91
CUX1-221ENST00000622516 CCDC187A0A096LP49 1063 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 IGKV1-9A0A0C4DH69 117 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 EIF1BO60739 113 aaKnown RBP9.34□□□□□ -0.91
CUX1-221ENST00000622516 CD59P13987 128 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 B4GALT1P15291 398 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 FAHP16930 419 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 CSNK2A1P68400 391 aaPredicted RBP9.34□□□□□ -0.91
CUX1-221ENST00000622516 SSPNQ14714 243 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 DBX2Q6ZNG2 339 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 C1QL2Q7Z5L3 287 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 FJX1Q86VR8 437 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 OR5AS1Q8N127 324 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 FTMTQ8N4E7 242 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 NKAIN3Q8N8D7 197 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 OR10K1Q8NGX5 313 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 OR2AE1Q8NHA4 323 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 ABHD3Q8WU67 409 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 NABP1Q96AH0 204 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 NAA11Q9BSU3 229 aaPredicted RBP9.34□□□□□ -0.91
CUX1-221ENST00000622516 DPCDQ9BVM2 203 aaPredicted RBP9.34□□□□□ -0.91
CUX1-221ENST00000622516 POFUT1Q9H488 388 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 TAS2R8Q9NYW2 309 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms