RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 GABRA4P48169 554 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 ZNF763Q0D2J5 394 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 EXOSC6Q5RKV6 272 aaKnown RBP9.16□□□□□ -0.94
VPS39-214ENST00000614932 MRPL41Q8IXM3 137 aaKnown RBP9.16□□□□□ -0.94
VPS39-214ENST00000614932 ZNF433Q8N7K0 673 aaPredicted RBP9.16□□□□□ -0.94
VPS39-214ENST00000614932 OR8S1Q8NH09 359 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 OR14C36Q8NHC7 312 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 PGAM5Q96HS1 289 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 SLC35E1Q96K37 410 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 GFI1Q99684 422 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 CNTNAP3Q9BZ76 1288 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 KIR3DX1Q9H7L2 352 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 HINT3Q9NQE9 182 aaKnown RBP9.16□□□□□ -0.94
VPS39-214ENST00000614932 AURKAIP1Q9NWT8 199 aaPredicted RBP9.16□□□□□ -0.94
VPS39-214ENST00000614932 SLC7A11Q9UPY5 501 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 MSGN1A6NI15 193 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 NPIPA7E9PJI5 369 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 K7EPK0 472 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 GPR37L1O60883 481 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 NBEAP1P0C6P0 100 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 NPIPA8P0DM63 369 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 NR2F1P10589 423 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 SRMP19623 302 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 PYCR1P32322 319 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 STPG1Q5TH74 334 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 AADACL3Q5VUY0 350 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 GBGT1Q8N5D6 347 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 FAM71E2Q8N5Q1 922 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 MITD1Q8WV92 249 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 DVL3Q92997 716 aaPredicted RBP9.15□□□□□ -0.94
VPS39-214ENST00000614932 C16orf58Q96GQ5 468 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 WFDC6Q9BQY6 131 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 PBDC1Q9BVG4 233 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 WWTR1Q9GZV5 400 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 ARV1Q9H2C2 271 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 SYNPO2LQ9H987 977 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 STEAP1Q9UHE8 339 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 MRPS33Q9Y291 106 aaKnown RBP9.15□□□□□ -0.94
VPS39-214ENST00000614932 PLXND1Q9Y4D7 1925 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 C5orf51A6NDU8 294 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 UNC119BA6NIH7 251 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 A8MVM7 634 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 VAMP5O95183 116 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 ATXN8OSP0DMR3 200 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 OR5H8P0DN80 308 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 TSFMP43897 325 aaKnown RBP9.15□□□□□ -0.94
VPS39-214ENST00000614932 OR12D2P58182 307 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 HSPB3Q12988 150 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 CST6Q15828 149 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 TMEM241Q24JQ0 296 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 AGBL4Q5VU57 503 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 RPL7L1Q6DKI1 246 aaKnown RBP9.15□□□□□ -0.94
VPS39-214ENST00000614932 LYG2Q86SG7 212 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 WDFY1Q8IWB7 410 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 SUMF2Q8NBJ7 301 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 SMPDL3AQ92484 453 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 MRGPRX1Q96LB2 322 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 PHB2Q99623 299 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 SGPP1Q9BX95 441 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 RSPO3Q9BXY4 272 aaPredicted RBP9.15□□□□□ -0.94
VPS39-214ENST00000614932 MYNNQ9NPC7 610 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 PLA2G2EQ9NZK7 142 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 GPR34Q9UPC5 381 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 CLDN16Q9Y5I7 305 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 ETV7Q9Y603 341 aa9.15□□□□□ -0.94
VPS39-214ENST00000614932 KIF26AQ9ULI4 1882 aaPredicted RBP9.15□□□□□ -0.95
VPS39-214ENST00000614932 TAAR5O14804 337 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 SLC2A10O95528 541 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 SCGB1D1O95968 90 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 IFNA21P01568 189 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 ZBTB25P24278 435 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 CCKARP32238 428 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 NR0B2Q15466 257 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 COA6Q5JTJ3 125 aaKnown RBP9.14□□□□□ -0.95
VPS39-214ENST00000614932 GRINAQ7Z429 371 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 RAB8BQ92930 207 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 TSLPQ969D9 159 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 TMEM18Q96B42 140 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 FAM71F1Q96KD3 344 aaPredicted RBP9.14□□□□□ -0.95
VPS39-214ENST00000614932 TECTBQ96PL2 329 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 AQP10Q96PS8 301 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 SLC5A7Q9GZV3 580 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 MTIF3Q9H2K0 278 aaKnown RBP9.14□□□□□ -0.95
VPS39-214ENST00000614932 PDE7BQ9NP56 450 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 ST6GALNAC2Q9UJ37 374 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 V9GY05 133 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 H3BQ15 152 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 RAB27BO00194 218 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 PLPP1O14494 284 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 EIF1AYO14602 144 aaKnown RBP9.14□□□□□ -0.95
VPS39-214ENST00000614932 FURINP09958 794 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 CD37P11049 281 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 NTSP30990 170 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 EIF1AXP47813 144 aaKnown RBP9.14□□□□□ -0.95
VPS39-214ENST00000614932 GLIPR1P48060 266 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 SNRPNP63162 240 aaKnown RBP9.14□□□□□ -0.95
VPS39-214ENST00000614932 CYCSP99999 105 aaKnown RBP9.14□□□□□ -0.95
VPS39-214ENST00000614932 DLX2Q07687 328 aaPredicted RBP9.14□□□□□ -0.95
VPS39-214ENST00000614932 PGGHGQ32M88 737 aa9.14□□□□□ -0.95
VPS39-214ENST00000614932 SLC25A26Q70HW3 274 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms