RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 OPCMLQ14982 345 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 RBBP5Q15291 538 aaKnown RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 LINC01620Q4KN68 170 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 TMEM35AQ53FP2 167 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 PHLDA2Q53GA4 152 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 ATL3Q6DD88 541 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 DUX4L9Q6RFH8 374 aaPredicted RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 BRD3OSQ6XYD6 125 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 PIWIL4Q7Z3Z4 852 aaKnown RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 TMEM139Q8IV31 216 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 C1orf174Q8IYL3 243 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 CDK20Q8IZL9 346 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF567Q8N184 647 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 TCAIMQ8N3R3 496 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 TBC1D19Q8N5T2 526 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF433Q8N7K0 673 aaPredicted RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 MLKLQ8NB16 471 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 WFDC9Q8NEX5 89 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 OR5AU1Q8NGC0 362 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 OR11H4Q8NGC9 324 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 MITD1Q8WV92 249 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 LIPHQ8WWY8 451 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 RAB8BQ92930 207 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 ISOC1Q96CN7 298 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 C7orf34Q96L11 122 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 TSNARE1Q96NA8 513 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 OLFM3Q96PB7 478 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 UHRF2Q96PU4 802 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 ALS2CR12Q96Q35 445 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 SLC25A33Q9BSK2 321 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 ROPN1BQ9BZX4 212 aaPredicted RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 PCBD2Q9H0N5 130 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 SPNS1Q9H2V7 528 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 DSN1Q9H410 356 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 KAT8Q9H7Z6 458 aaKnown RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 CHRAC1Q9NRG0 131 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 DUX4Q9UBX2 424 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 MIOXQ9UGB7 285 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 LCMT1Q9UIC8 334 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF346Q9UL40 294 aaKnown RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 PACSIN2Q9UNF0 486 aaPredicted RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 TRAV40A0A0B4J280 105 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 GOLGA8TH3BQL2 631 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF701M0R085 212 aaPredicted RBP3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PRMT5O14744 637 aaPredicted RBP3.49□□□□□ -1.85
LINC00540-201ENST00000611481 TNFSF11O14788 317 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 ERI3O43414 337 aaKnown RBP3.49□□□□□ -1.85
LINC00540-201ENST00000611481 MGRN1O60291 552 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 ANXA9O76027 345 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 SMC2O95347 1197 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 HPRP00739 348 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 IGHV3-9P01782 118 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 LYNP07948 512 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 RPL22P35268 128 aaKnown RBP3.49□□□□□ -1.85
LINC00540-201ENST00000611481 AHRP35869 848 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PPP1R2P41236 205 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 OR3A2P47893 321 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 CCT3P49368 545 aaKnown RBP3.49□□□□□ -1.85
LINC00540-201ENST00000611481 RAB9AP51151 201 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PLA2G16P53816 162 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 DYNLT1P63172 113 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 ARL16Q0P5N6 197 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PLCXD2Q0VAA5 305 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 CDH17Q12864 832 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 MERTKQ12866 999 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 BNIP1Q12981 228 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 GPR50Q13585 617 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 MEF2DQ14814 521 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 POU6F1Q14863 301 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PDK2Q15119 407 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PARP6Q2NL67 630 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 TMEM44Q2T9K0 475 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 KLHL38Q2WGJ6 581 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 ACSBG2Q5FVE4 666 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 XKR7Q5GH72 579 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PAPPA-AS1Q5QFB9 102 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 LCE3CQ5T5A8 94 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 LGSNQ5TDP6 509 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 SLC27A4Q6P1M0 643 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 EIF3MQ7L2H7 374 aaKnown RBP3.49□□□□□ -1.85
LINC00540-201ENST00000611481 SMIM29Q86T20 159 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 TGIF2LXQ8IUE1 241 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 RPP25LQ8N5L8 163 aaKnown RBP3.49□□□□□ -1.85
LINC00540-201ENST00000611481 TRIML2Q8N7C3 387 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 OR2V1Q8NHB1 315 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 GLYATL2Q8WU03 294 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 SLC38A5Q8WUX1 472 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 ADIPOR1Q96A54 375 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 SLC25A36Q96CQ1 311 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 OMA1Q96E52 524 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 AKR1E2Q96JD6 320 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PRRC1Q96M27 445 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 RNF157Q96PX1 679 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PANX1Q96RD7 426 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 KCNS3Q9BQ31 491 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 NXF5Q9H1B4 397 aaKnown RBP3.49□□□□□ -1.85
LINC00540-201ENST00000611481 RGCCQ9H4X1 137 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 GEMIN7Q9H840 131 aaKnown RBP3.49□□□□□ -1.85
LINC00540-201ENST00000611481 UFSP2Q9NUQ7 469 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PAQR5Q9NXK6 330 aaPredicted RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms