RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PRSS57Q6UWY2 283 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 OR5AS1Q8N127 324 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 SYS1Q8N2H4 156 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 OR8G5Q8NG78 346 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 RORBQ92753 470 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 TMEM80Q96HE8 168 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 MSL2Q9HCI7 577 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 G6PC2Q9NQR9 355 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 ACOXLQ9NUZ1 547 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 NKIRAS2Q9NYR9 191 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 ZNF391Q9UJN7 358 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 GNG8Q9UK08 70 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 OR52A1Q9UKL2 312 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 DIMT1Q9UNQ2 313 aaKnown RBP16.49■□□□□ 0.23
UPF1-209ENST00000600310 SNX5Q9Y5X3 404 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 TEP1Q99973 2627 aaKnown RBP16.49■□□□□ 0.23
UPF1-209ENST00000600310 A0A0U1RQV5 110 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 hCG_38984A0A1B0GV85 526 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 GGT3PA6NGU5 568 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 ADH4P08319 380 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 LIMS3P0CW19 117 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 LIMS4P0CW20 117 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 DDOSTP39656 456 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 TESK1Q15569 626 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 PCGF3Q3KNV8 242 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 Q6ZR03 302 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 KRTAP1-3Q8IUG1 177 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 ELMOD2Q8IZ81 293 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 PPP1R14AQ96A00 147 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 RNF166Q96A37 237 aaPredicted RBP16.48■□□□□ 0.23
UPF1-209ENST00000600310 C4orf36Q96KX1 117 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 SLC30A2Q9BRI3 323 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 FKBP14Q9NWM8 211 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 ZDHHC8Q9ULC8 765 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 PDZD2O15018 2839 aa16.48■□□□□ 0.23
UPF1-209ENST00000600310 J3QLW9 94 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 SLC1A7O00341 560 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 SPRY3O43610 288 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 LILRA1O75019 489 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 IGLV3-1P01715 115 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 IGHV1-46P01743 117 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 TTRP02766 147 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 ZNF19P17023 458 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 ST3GAL4Q11206 333 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 FAM209AQ5JX71 171 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 Q5PR19 223 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 FDX2Q6P4F2 183 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 CATSPERDQ86XM0 798 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 OR56B2PQ8NGI1 322 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 SPRYD4Q8WW59 207 aaPredicted RBP16.47■□□□□ 0.23
UPF1-209ENST00000600310 ITFG2Q969R8 447 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 PELI1Q96FA3 418 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 LYZL4Q96KX0 146 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 CNBD2Q96M20 576 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 DIRC2Q96SL1 478 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 Q9H521 79 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 EXOSC1Q9Y3B2 195 aaKnown RBP16.47■□□□□ 0.23
UPF1-209ENST00000600310 CSMD2Q7Z408 3487 aa16.47■□□□□ 0.23
UPF1-209ENST00000600310 ARID1AO14497 2285 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 A0A1B0GWJ7 208 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 SSX4O60224 188 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 CCDC159P0C7I6 412 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 MYL12AP19105 171 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 PSMB10P40306 273 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 MAGEB1P43366 347 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 GSK3AP49840 483 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 ETV1P50549 477 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 MVKQ03426 396 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 MED21Q13503 144 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 OR8B8Q15620 311 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 GFOD2Q3B7J2 385 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 BCL2L15Q5TBC7 163 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 AHSA2Q719I0 299 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 ZNF540Q8NDQ6 660 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 BHLHE23Q8NDY6 225 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 OR13G1Q8NGZ3 307 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 ISG20L2Q9H9L3 353 aaKnown RBP16.46■□□□□ 0.23
UPF1-209ENST00000600310 TMEM100Q9NV29 134 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 SCN3BQ9NY72 215 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 GTF2A1LQ9UNN4 478 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 SLC22A13Q9Y226 551 aa16.46■□□□□ 0.23
UPF1-209ENST00000600310 CAB39Q9Y376 341 aaPredicted RBP16.46■□□□□ 0.23
UPF1-209ENST00000600310 ANKRD17O75179 2603 aaKnown RBP16.45■□□□□ 0.22
UPF1-209ENST00000600310 DENRO43583 198 aaKnown RBP16.45■□□□□ 0.22
UPF1-209ENST00000600310 LY6HO94772 140 aa16.45■□□□□ 0.22
UPF1-209ENST00000600310 CD55P08174 381 aa16.45■□□□□ 0.22
UPF1-209ENST00000600310 MRPL28Q13084 256 aaKnown RBP16.45■□□□□ 0.22
UPF1-209ENST00000600310 TNK1Q13470 666 aa16.45■□□□□ 0.22
UPF1-209ENST00000600310 WDR38Q5JTN6 314 aa16.45■□□□□ 0.22
UPF1-209ENST00000600310 STX19Q8N4C7 294 aa16.45■□□□□ 0.22
UPF1-209ENST00000600310 OR2G2Q8NGZ5 317 aa16.45■□□□□ 0.22
UPF1-209ENST00000600310 OR51E1Q8TCB6 317 aa16.45■□□□□ 0.22
UPF1-209ENST00000600310 SOX7Q9BT81 388 aa16.45■□□□□ 0.22
UPF1-209ENST00000600310 SLC22A4Q9H015 551 aa16.45■□□□□ 0.22
UPF1-209ENST00000600310 GPR84Q9NQS5 396 aa16.45■□□□□ 0.22
UPF1-209ENST00000600310 CHCHD3Q9NX63 227 aaKnown RBP16.45■□□□□ 0.22
UPF1-209ENST00000600310 MRPL15Q9P015 296 aaKnown RBP16.45■□□□□ 0.22
UPF1-209ENST00000600310 NCR1O76036 304 aa16.44■□□□□ 0.22
UPF1-209ENST00000600310 HPXP02790 462 aa16.44■□□□□ 0.22
UPF1-209ENST00000600310 ATP6V1B1P15313 513 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms