RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 OR4A8P0C604 315 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 DANCRP0C864 163 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 TUBG1P23258 451 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 SERPINF1P36955 418 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 ADIPOQQ15848 244 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 SSX1Q16384 188 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 YIF1BQ5BJH7 314 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 LIPKQ5VXJ0 399 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 RGS7BPQ6MZT1 257 aaPredicted RBP13.35□□□□□ -0.27
SS18-216ENST00000580751 DRAM2Q6UX65 266 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 RFPL4BQ6ZWI9 263 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 SPATC1Q76KD6 591 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 CDH24Q86UP0 819 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 DTX2Q86UW9 622 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 CLVS1Q8IUQ0 354 aaPredicted RBP13.35□□□□□ -0.27
SS18-216ENST00000580751 CCDC54Q8NEL0 328 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 OR1J1Q8NGS3 322 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 NRGNQ92686 78 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 NINJ1Q92982 152 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 RNF166Q96A37 237 aaPredicted RBP13.35□□□□□ -0.27
SS18-216ENST00000580751 APOBEC3DQ96AK3 386 aaPredicted RBP13.35□□□□□ -0.27
SS18-216ENST00000580751 ZNF799Q96GE5 643 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 CCL19Q99731 98 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 TUBG2Q9NRH3 451 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 SF3B6Q9Y3B4 125 aaKnown RBP13.35□□□□□ -0.27
SS18-216ENST00000580751 MAST4O15021 2626 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 TMEM269A0A1B0GVZ9 245 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 E9PI62 339 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 LOC110117498-PIK3R3F6TDL0 507 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 H3BSA7 217 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 ACSM4P0C7M7 580 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 BMP4P12644 408 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 FGF9P31371 208 aaPredicted RBP13.34□□□□□ -0.27
SS18-216ENST00000580751 PPP1CBP62140 327 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 EFNB3Q15768 340 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 RSPO1Q2MKA7 263 aaPredicted RBP13.34□□□□□ -0.27
SS18-216ENST00000580751 GPR107Q5VW38 600 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 CATSPERDQ86XM0 798 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 GHSRQ92847 366 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 PIGTQ969N2 578 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 MRPL24Q96A35 216 aaKnown RBP13.34□□□□□ -0.27
SS18-216ENST00000580751 PGLYRP3Q96LB9 341 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 COMMD4Q9H0A8 199 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 LIME1Q9H400 295 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 PLK3Q9H4B4 646 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 CBLN4Q9NTU7 201 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 RSL24D1Q9UHA3 163 aaKnown RBP13.34□□□□□ -0.27
SS18-216ENST00000580751 NUFIP1Q9UHK0 495 aaKnown RBP13.34□□□□□ -0.27
SS18-216ENST00000580751 ZNF391Q9UJN7 358 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 STUB1Q9UNE7 303 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 LAMP3Q9UQV4 416 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 ZNF281Q9Y2X9 895 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 DSCAMO60469 2012 aa13.34□□□□□ -0.27
SS18-216ENST00000580751 TEX15Q9BXT5 2789 aa13.33□□□□□ -0.27
SS18-216ENST00000580751 TRDV1A0A1B0GX56 115 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 OR4C45A6NMZ5 311 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 B9A039 149 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 PSMD9O00233 223 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 MAGEB4O15481 346 aaPredicted RBP13.33□□□□□ -0.28
SS18-216ENST00000580751 AIREO43918 545 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 GATBO75879 557 aaKnown RBP13.33□□□□□ -0.28
SS18-216ENST00000580751 RPP14O95059 124 aaKnown RBP13.33□□□□□ -0.28
SS18-216ENST00000580751 ATE1O95260 518 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 NGFP01138 241 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 SOD3P08294 240 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 UBCP0CG48 685 aaKnown RBP13.33□□□□□ -0.28
SS18-216ENST00000580751 DNASE1P24855 282 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 SLC6A9P48067 706 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 GTF2A1P52655 376 aaPredicted RBP13.33□□□□□ -0.28
SS18-216ENST00000580751 SELENOVP59797 346 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 SNRPD2P62316 118 aaKnown RBP13.33□□□□□ -0.28
SS18-216ENST00000580751 DOC2BQ14184 412 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 TMEM244Q5VVB8 128 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 OR52H1Q8NGJ2 320 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 OR5L1Q8NGL2 311 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 OR5AK2Q8NH90 309 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 TRAF4Q9BUZ4 470 aaPredicted RBP13.33□□□□□ -0.28
SS18-216ENST00000580751 C1QTNF5Q9BXJ0 243 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 TTTY10Q9BZA0 68 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 CXorf56Q9H5V9 222 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 FAM206AQ9NX38 181 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 FRRS1LQ9P0K9 344 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 FBXO9Q9UK97 447 aaPredicted RBP13.33□□□□□ -0.28
SS18-216ENST00000580751 SSR3Q9UNL2 185 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 PLEKHA6Q9Y2H5 1048 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 GSTK1Q9Y2Q3 226 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 CSMD2Q7Z408 3487 aa13.33□□□□□ -0.28
SS18-216ENST00000580751 PDZD2O15018 2839 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 SLC22A1O15245 554 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 LCATP04180 440 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 ZNF250P15622 560 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 GCH1P30793 250 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 CRYBB2P43320 205 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 CX3CR1P49238 355 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 EVX1P49640 407 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 PRKXP51817 358 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 KLF3P57682 345 aaPredicted RBP13.32□□□□□ -0.28
SS18-216ENST00000580751 ERVS71-1P61550 626 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 ZNF718Q3SXZ3 478 aa13.32□□□□□ -0.28
SS18-216ENST00000580751 COLCA1Q6ZS62 124 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms