RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 GMEB1Q9Y692 573 aa14.51□□□□□ -0.09
CLK3-227ENST00000570296 TEX13CA0A0J9YWL9 993 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 H0YAE9 185 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 H7C1C5 153 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 LCN6P62502 163 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 BLCAPP62952 87 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 SLC2A7Q6PXP3 512 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 ETV3LQ6ZN32 361 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 MSRB3Q8IXL7 192 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 OR9Q1Q8NGQ5 310 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 RPS4Y2Q8TD47 263 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 TMEM255BQ8WV15 326 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 TMEM239Q8WW34 195 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 DUS3LQ96G46 650 aaKnown RBP14.5□□□□□ -0.09
CLK3-227ENST00000570296 PKNOX2Q96KN3 472 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 DNTTIP1Q9H147 329 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 SDR39U1Q9NRG7 319 aaPredicted RBP14.5□□□□□ -0.09
CLK3-227ENST00000570296 C14orf119Q9NWQ9 140 aa14.5□□□□□ -0.09
CLK3-227ENST00000570296 MRPL15Q9P015 296 aaKnown RBP14.5□□□□□ -0.09
CLK3-227ENST00000570296 CD300LBA8K4G0 201 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.49□□□□□ -0.09
CLK3-227ENST00000570296 AHCYL1O43865 530 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 KRTAP27-1Q3LI81 207 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 KHDC1LQ5JSQ8 128 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 LRIF1Q5T3J3 769 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 MRPL21Q7Z2W9 205 aaKnown RBP14.49□□□□□ -0.09
CLK3-227ENST00000570296 NKAIN4Q8IVV8 208 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 LRRC75AQ8NAA5 344 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 LRRC29Q8WV35 223 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 CITED4Q96RK1 184 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 PNPOQ9NVS9 261 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.49□□□□□ -0.09
CLK3-227ENST00000570296 CORO2BQ9UQ03 480 aa14.49□□□□□ -0.09
CLK3-227ENST00000570296 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.48□□□□□ -0.09
CLK3-227ENST00000570296 TLDC2A0PJX2 215 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 SELLP14151 372 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 CTLA4P16410 223 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 AMY2BP19961 511 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 GRK5P34947 590 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 LGALS4P56470 323 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 HIST1H3AP68431 136 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 IL5RAQ01344 420 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 RSPO1Q2MKA7 263 aaPredicted RBP14.48□□□□□ -0.09
CLK3-227ENST00000570296 HIST2H3PS2Q5TEC6 136 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 STUMQ69YW2 141 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 HIST2H3AQ71DI3 136 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 GLB1L2Q8IW92 636 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 GJC3Q8NFK1 279 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 OR9I1Q8NGQ6 314 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 PRR25Q96S07 402 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 HEXA-AS1Q9H8Q6 139 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 ABCB10Q9NRK6 738 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 MED31Q9Y3C7 131 aa14.48□□□□□ -0.09
CLK3-227ENST00000570296 RBMY1BA6NDE4 496 aaKnown RBP14.47□□□□□ -0.09
CLK3-227ENST00000570296 RBMY1EA6NEQ0 496 aaKnown RBP14.47□□□□□ -0.09
CLK3-227ENST00000570296 BIRC5O15392 142 aa14.47□□□□□ -0.09
CLK3-227ENST00000570296 ACSM4P0C7M7 580 aa14.47□□□□□ -0.09
CLK3-227ENST00000570296 RBMY1DP0C7P1 496 aaKnown RBP14.47□□□□□ -0.09
CLK3-227ENST00000570296 GPX2P18283 190 aa14.47□□□□□ -0.09
CLK3-227ENST00000570296 THBS3P49746 956 aa14.47□□□□□ -0.09
CLK3-227ENST00000570296 RAB13P51153 203 aa14.47□□□□□ -0.09
CLK3-227ENST00000570296 CAV3P56539 151 aa14.47□□□□□ -0.09
CLK3-227ENST00000570296 OTPQ5XKR4 325 aa14.47□□□□□ -0.09
CLK3-227ENST00000570296 KCTD18Q6PI47 426 aaPredicted RBP14.47□□□□□ -0.09
CLK3-227ENST00000570296 SLC25A10Q9UBX3 287 aaPredicted RBP14.47□□□□□ -0.09
CLK3-227ENST00000570296 POLR1DQ9Y2S0 133 aa14.47□□□□□ -0.09
CLK3-227ENST00000570296 HTR3EA5X5Y0 456 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 FAM90A8PA6NJQ4 464 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 TRPC5OSA6NMA1 111 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 M0QX08 132 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 XKRYO14609 159 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 TYROBPO43914 113 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 JTBO76095 146 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 POU1F1P28069 291 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 KCNMB1Q16558 191 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 PIGWQ7Z7B1 504 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 C11orf53Q8IXP5 236 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 EIF1ADQ8N9N8 165 aaKnown RBP14.46□□□□□ -0.09
CLK3-227ENST00000570296 FOXRED1Q96CU9 486 aaPredicted RBP14.46□□□□□ -0.09
CLK3-227ENST00000570296 MED30Q96HR3 178 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 IKZF5Q9H5V7 419 aa14.46□□□□□ -0.09
CLK3-227ENST00000570296 PRSS37A4D1T9 235 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 LCATP04180 440 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 NDUFB7P17568 137 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 NAA10P41227 235 aaPredicted RBP14.45□□□□□ -0.1
CLK3-227ENST00000570296 GP2P55259 537 aaKnown RBP14.45□□□□□ -0.1
CLK3-227ENST00000570296 PLA1AQ53H76 456 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 MKXQ8IYA7 352 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 C11orf65Q8NCR3 313 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 OR52H1Q8NGJ2 320 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.45□□□□□ -0.1
CLK3-227ENST00000570296 SEH1LQ96EE3 360 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 ZNF649Q9BS31 505 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 POLR2J2Q9GZM3 115 aaKnown RBP14.45□□□□□ -0.1
CLK3-227ENST00000570296 POLR2J3Q9H1A7 115 aaKnown RBP14.45□□□□□ -0.1
CLK3-227ENST00000570296 VAPAQ9P0L0 249 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 SLAMF8Q9P0V8 285 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 GRHPRQ9UBQ7 328 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 LGALS13Q9UHV8 139 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 RPS6KA6Q9UK32 745 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms