RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	RNF144B	Q7Z419	303 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	OR13C2	Q8NGS9	318 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	LRRC29	Q8WV35	223 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	SYT4	Q9H2B2	425 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	METTL8	Q9H825	291 aa	Known RBP	13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	ADA2	Q9NZK5	511 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	TRBV23-1	A0A0A0MS06	115 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488		A0A1W2PQ09	198 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	MEGF11	A6BM72	1044 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	IMPA2	O14732	288 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	POLR3G	O15318	223 aa	Predicted RBP	13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	ANGPTL7	O43827	346 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	CD14	P08571	375 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	NHLRC4	P0CG21	123 aa	Predicted RBP	13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	MUC1	P15941	1255 aa	Predicted RBP	13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	GGT2	P36268	569 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	PCK2	Q16822	640 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	AGK	Q53H12	422 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	LIAT1	Q6ZQX7	453 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	LNX2	Q8N448	690 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	OR5T2	Q8NGG2	359 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	DPF1	Q92782	380 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	SEH1L	Q96EE3	360 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	PITX2	Q99697	317 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	TMEM109	Q9BVC6	243 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	NDUFAF1	Q9Y375	327 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	LHFPL6	Q9Y693	200 aa		13.12	□□□□□ -0.31
CLK3-223	ENST00000568488	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	HTR3E	A5X5Y0	456 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488		H0YAE9	185 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	DUS4L	O95620	317 aa	Known RBP	13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	SELL	P14151	372 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	MRPL19	P49406	292 aa	Known RBP	13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	GSK3B	P49841	420 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	CRYBA2	P53672	197 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	HIST1H3A	P68431	136 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	MZT1	Q08AG7	82 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	ST3GAL3	Q11203	375 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	FHL1	Q13642	323 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	AANAT	Q16613	207 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	ANKDD1A	Q495B1	522 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	HIST2H3PS2	Q5TEC6	136 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	EPGN	Q6UW88	154 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	HIST2H3A	Q71DI3	136 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	DHDDS	Q86SQ9	333 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	NRM	Q8IXM6	262 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	OR9Q1	Q8NGQ5	310 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	OR10A6	Q8NH74	314 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	AJUBA	Q96IF1	538 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	KRTAP17-1	Q9BYP8	105 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	NUAK2	Q9H093	628 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	C14orf119	Q9NWQ9	140 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	BAG5	Q9UL15	447 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488	DNAH1	Q9P2D7	4330 aa		13.11	□□□□□ -0.31
CLK3-223	ENST00000568488		M0R1W7	72 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	GRK5	P34947	590 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	WDR4	P57081	412 aa	Known RBP	13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	GMFB	P60983	142 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	ZNF92	Q03936	586 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	EGFEM1P	Q0D2K5	195 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	KRR1	Q13601	381 aa	Known RBP	13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	KCNMB1	Q16558	191 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	PLA1A	Q53H76	456 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	DMRTC1	Q5HYR2	192 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	OR5AU1	Q8NGC0	362 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	C8orf46	Q8TAG6	207 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	PIFO	Q8TCI5	191 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	WIPF2	Q8TF74	440 aa	Predicted RBP	13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	DUS3L	Q96G46	650 aa	Known RBP	13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	CHID1	Q9BWS9	393 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	CDCA4	Q9BXL8	241 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	PRSS22	Q9GZN4	317 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	WNT10A	Q9GZT5	417 aa		13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	GAR1	Q9NY12	217 aa	Known RBP	13.1	□□□□□ -0.31
CLK3-223	ENST00000568488	BHLHE40	O14503	412 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	NDUFB7	P17568	137 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	AMY2B	P19961	511 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	IFNA8	P32881	189 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	TGM4	P49221	684 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	RAB13	P51153	203 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	TPTE	P56180	551 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	PRKCD	Q05655	676 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	TRAP1	Q12931	704 aa	Known RBP	13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	DCTN2	Q13561	401 aa	Known RBP	13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	VMAC	Q2NL98	169 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	HCP5	Q6MZN7	132 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	CCDC121	Q6ZUS5	278 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	CCDC80	Q76M96	950 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	LINC00346	Q8IVM7	164 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488		Q8N2B8	174 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	OR8S1	Q8NH09	359 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	OR2AE1	Q8NHA4	323 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	CGREF1	Q99674	301 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	KAT8	Q9H7Z6	458 aa	Known RBP	13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	NMNAT1	Q9HAN9	279 aa	Predicted RBP	13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	RNPEPL1	Q9HAU8	725 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	SNTG1	Q9NSN8	517 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	MRPL15	Q9P015	296 aa	Known RBP	13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	RHCG	Q9UBD6	479 aa		13.09	□□□□□ -0.31
CLK3-223	ENST00000568488	ZNF391	Q9UJN7	358 aa		13.09	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms