RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PGAP1Q75T13 922 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 PNPLA2Q96AD5 504 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 PGAM5Q96HS1 289 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 C1orf147Q96MC9 270 aaPredicted RBP17.82■□□□□ 0.44
CLN3-230ENST00000568076 FBLN5Q9UBX5 448 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 CNTRLQ7Z7A1 2325 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 DOCK10Q96BY6 2186 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 DBHP09172 617 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 ZNF735P0CB33 412 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 OTX1P32242 354 aaPredicted RBP17.82■□□□□ 0.44
CLN3-230ENST00000568076 OR3A4PP47883 348 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 OR10D3Q8NH80 312 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 CHST6Q9GZX3 395 aa17.82■□□□□ 0.44
CLN3-230ENST00000568076 CCDC187A0A096LP49 1063 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 TOXO94900 526 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 MT-CO3P00414 261 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 CD74P04233 296 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 CNR1P21554 472 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 CD96P40200 585 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 ZNF84P51523 738 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 MRPS34P82930 218 aaKnown RBP17.81■□□□□ 0.44
CLN3-230ENST00000568076 CDNFQ49AH0 187 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 DMRTC1Q5HYR2 192 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 GLIPR1L1Q6UWM5 242 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 FJX1Q86VR8 437 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 SSC4DQ8WTU2 575 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 WDR89Q96FK6 387 aaPredicted RBP17.81■□□□□ 0.44
CLN3-230ENST00000568076 NICN1Q9BSH3 213 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 CHIAQ9BZP6 476 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 LRFN1Q9P244 771 aa17.81■□□□□ 0.44
CLN3-230ENST00000568076 TSC22D2O75157 780 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 CYB5AP00167 134 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 ITGB2P05107 769 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 GDF1P27539 372 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 AVPR2P30518 371 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 SLC6A9P48067 706 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 GFRA1P56159 465 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 RSPO4Q2I0M5 234 aaPredicted RBP17.8■□□□□ 0.44
CLN3-230ENST00000568076 LGALSLQ3ZCW2 172 aaPredicted RBP17.8■□□□□ 0.44
CLN3-230ENST00000568076 FAM27BQ5VT28 67 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 ABLIM2Q6H8Q1 611 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 TMEM104Q8NE00 496 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 OR4S1Q8NGB4 309 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 OR2V1Q8NHB1 315 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 SNAPC3Q92966 411 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 ZNF107Q9UII5 783 aaPredicted RBP17.8■□□□□ 0.44
CLN3-230ENST00000568076 MRPS28Q9Y2Q9 187 aaKnown RBP17.8■□□□□ 0.44
CLN3-230ENST00000568076 MRPS18CQ9Y3D5 142 aaKnown RBP17.8■□□□□ 0.44
CLN3-230ENST00000568076 A0A0A6YYD4 124 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 NEURL1O76050 574 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 MELTFP08582 738 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 GNB3P16520 340 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 CRIP3Q6Q6R5 217 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 CDH26Q8IXH8 852 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 ZNF101Q8IZC7 436 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 CHST4Q8NCG5 386 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 SIGLEC12Q96PQ1 595 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 LPAR5Q9H1C0 372 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 EXO5Q9H790 373 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 PLEK2Q9NYT0 353 aa17.8■□□□□ 0.44
CLN3-230ENST00000568076 A0A0U1RQV5 110 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 ZNF736B4DX44 427 aaPredicted RBP17.79■□□□□ 0.44
CLN3-230ENST00000568076 AMY2AP04746 511 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 HCKP08631 526 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 POU3F2P20265 443 aaPredicted RBP17.79■□□□□ 0.44
CLN3-230ENST00000568076 C2orf68Q2NKX9 166 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 IDO2Q6ZQW0 420 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 TRAPPC6BQ86SZ2 158 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 GVQW1Q8N7I0 195 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 NUDCD2Q8WVJ2 157 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 GPR87Q9BY21 358 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 CRLF2Q9HC73 371 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 M0R135 149 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 OR2A4O95047 310 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 HTR2BP41595 481 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 UBE2MP61081 183 aaKnown RBP17.79■□□□□ 0.44
CLN3-230ENST00000568076 SLC22A6Q4U2R8 563 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 TMEM164Q5U3C3 297 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 DHRS13Q6UX07 377 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 ZNF584Q8IVC4 421 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 MUC20Q8N307 709 aaPredicted RBP17.79■□□□□ 0.44
CLN3-230ENST00000568076 OR10R2Q8NGX6 335 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 ZNF799Q96GE5 643 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 ZNF845Q96IR2 970 aaPredicted RBP17.79■□□□□ 0.44
CLN3-230ENST00000568076 OR2A7Q96R45 310 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 SELENOIQ9C0D9 397 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 HEXA-AS1Q9H8Q6 139 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 V9GYS6 101 aa17.79■□□□□ 0.44
CLN3-230ENST00000568076 A0A1W2PP11 408 aa17.78■□□□□ 0.44
CLN3-230ENST00000568076 C21orf140B9A014 251 aa17.78■□□□□ 0.44
CLN3-230ENST00000568076 GIPP09681 153 aaPredicted RBP17.78■□□□□ 0.44
CLN3-230ENST00000568076 CHMP1BQ7LBR1 199 aa17.78■□□□□ 0.44
CLN3-230ENST00000568076 OR2W3Q7Z3T1 314 aa17.78■□□□□ 0.44
CLN3-230ENST00000568076 ADAMTS17Q8TE56 1095 aa17.78■□□□□ 0.44
CLN3-230ENST00000568076 CYYR1Q96J86 154 aa17.78■□□□□ 0.44
CLN3-230ENST00000568076 ALKBH3Q96Q83 286 aaPredicted RBP17.78■□□□□ 0.44
CLN3-230ENST00000568076 SLC6A7Q99884 636 aa17.78■□□□□ 0.44
CLN3-230ENST00000568076 HES7Q9BYE0 225 aa17.78■□□□□ 0.44
CLN3-230ENST00000568076 EIF3KQ9UBQ5 218 aaKnown RBP17.78■□□□□ 0.44
CLN3-230ENST00000568076 AHCTF1Q8WYP5 2266 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms