RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 FBXO4Q9UKT5 387 aa5.52□□□□□ -1.53
CLN3-223ENST00000566472 PCDH15Q96QU1 1955 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 FER1L5A0AVI2 2057 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 A0A0B4J2A0 478 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 A0A0D9SG52 128 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 WIPF3A6NGB9 483 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 CEACAM18A8MTB9 384 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 LINC01387J3KSC0 135 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 M0QYG6 137 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 MFNGO00587 321 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 RER1O15258 196 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 ZIC3O60481 467 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 RAMP1O60894 148 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 STK17BO94768 372 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 TOXO94900 526 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 P04436 131 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 FCER2P06734 321 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 CELA2AP08217 269 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 HCKP08631 526 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 CST2P09228 141 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 RRASP10301 218 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 CCL4P13236 92 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 SDHBP21912 280 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 ZBTB25P24278 435 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 CDAP32320 146 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 H2BFSP57053 126 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 B3GALT5-AS1P59052 145 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 RAC3P60763 192 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 RPS27AP62979 156 aaKnown RBP5.51□□□□□ -1.53
CLN3-223ENST00000566472 UBA52P62987 128 aaKnown RBP5.51□□□□□ -1.53
CLN3-223ENST00000566472 SIGLEC14Q08ET2 396 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 SCRN3Q0VDG4 424 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 MFAP5Q13361 173 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 ZNF345Q14585 488 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 HLXQ14774 488 aaPredicted RBP5.51□□□□□ -1.53
CLN3-223ENST00000566472 RAB35Q15286 201 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 STK11Q15831 433 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 SGCAQ16586 387 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 TRIM61Q5EBN2 209 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 NHLRC3Q5JS37 347 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 DCAF12Q5T6F0 453 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 FAM27BQ5VT28 67 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 ABLIM2Q6H8Q1 611 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 OR10K2Q6IF99 312 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 H3F3CQ6NXT2 135 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 C11orf88Q6PI97 169 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 DRAM2Q6UX65 266 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 RFPL4BQ6ZWI9 263 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 TMUB2Q71RG4 321 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 FAM57BQ71RH2 274 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 PPP1R32Q7Z5V6 425 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 SLC51BQ86UW2 128 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 COMMD7Q86VX2 200 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 COMMD2Q86X83 199 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 ANGPTL5Q86XS5 388 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 C1orf210Q8IVY1 113 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 CCDC28AQ8IWP9 274 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 ZNF101Q8IZC7 436 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 GPR137CQ8N3F9 429 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 OR52H1Q8NGJ2 320 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 OR6K3Q8NGY3 331 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 SCARB1Q8WTV0 552 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 MITD1Q8WV92 249 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 RELTQ969Z4 430 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 RAB3CQ96E17 227 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 FAM71F1Q96KD3 344 aaPredicted RBP5.51□□□□□ -1.53
CLN3-223ENST00000566472 GUCD1Q96NT3 240 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 CITED4Q96RK1 184 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 CDC6Q99741 560 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 SLC6A7Q99884 636 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 DDA1Q9BW61 102 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 TM2D1Q9BX74 207 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 ULBP2Q9BZM5 246 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 CHST5Q9GZS9 411 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 OR10A2Q9H208 303 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 AKIRIN1Q9H9L7 192 aaPredicted RBP5.51□□□□□ -1.53
CLN3-223ENST00000566472 ZNF160Q9HCG1 818 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 SHPKQ9UHJ6 478 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 ZNF391Q9UJN7 358 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 VSIG4Q9Y279 399 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 PCDHGA1Q9Y5H4 931 aa5.51□□□□□ -1.53
CLN3-223ENST00000566472 BRWD1Q9NSI6 2320 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 FXYD6-FXYD2A0A087WZ82 144 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 A0A0J9YW62 118 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 hCG_1807616A0A1W2PRN6 198 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 C9orf170A2RU37 121 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 FOXI3A8MTJ6 420 aaPredicted RBP5.5□□□□□ -1.53
CLN3-223ENST00000566472 SERPINE3A8MV23 424 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 M0R135 149 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 CDK2AP1O14519 115 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 SMAD9O15198 467 aaKnown RBP5.5□□□□□ -1.53
CLN3-223ENST00000566472 ARPC5O15511 151 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 SSX5O60225 188 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 OR2F2O95006 317 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 MPIG6BO95866 241 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 CFDP00746 253 aaPredicted RBP5.5□□□□□ -1.53
CLN3-223ENST00000566472 HLA-AP01891 365 aaKnown RBP5.5□□□□□ -1.53
CLN3-223ENST00000566472 IFNA6P05013 189 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 SERPINA7P05543 415 aa5.5□□□□□ -1.53
CLN3-223ENST00000566472 NAT2P11245 290 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms