RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 SNF8Q96H20 258 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 FAM218AQ96MZ4 157 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 OLFM3Q96PB7 478 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 SORCS2Q96PQ0 1159 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 OR5B12Q96R08 314 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 LYSMD1Q96S90 227 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 PEBP4Q96S96 227 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 LGMNQ99538 433 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 NKX3-1Q99801 234 aaPredicted RBP4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 TBL1YQ9BQ87 522 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 KLHDC3Q9BQ90 382 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 BCL2L14Q9BZR8 327 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 TUBB1Q9H4B7 451 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 HRASLSQ9HDD0 168 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 MCUBQ9NWR8 336 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 CCDC59Q9P031 241 aaKnown RBP4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 PCYOX1Q9UHG3 505 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 NTNG1Q9Y2I2 539 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 HEBP2Q9Y5Z4 205 aa4.34□□□□□ -1.71
VPS35P1-201ENST00000563400 MYO16Q9Y6X6 1858 aa4.34□□□□□ -1.72
VPS35P1-201ENST00000563400 DENND4CQ5VZ89 1909 aa4.34□□□□□ -1.72
VPS35P1-201ENST00000563400 C2orf16Q68DN1 1984 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 TCF20Q9UGU0 1960 aaKnown RBP4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 DENND4AQ7Z401 1863 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 IGHV1OR15-9A0A0B4J2B8 117 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 A0A1W2PPI3 338 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 TMEM238C9JI98 176 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 E5RI56 91 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 H0Y980 276 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 MFSD11O43934 449 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 SLC25A14O95258 325 aaPredicted RBP4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 MPZL1O95297 269 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 PAK4O96013 591 aaPredicted RBP4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 OR4E1P0C645 316 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 OR56A5P0C7T3 313 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 FRMD6-AS1P0C7T7 363 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 RNH1P13489 461 aaKnown RBP4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 HLA-EP13747 358 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 CSNK2A2P19784 350 aaPredicted RBP4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 COX5AP20674 150 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 HMGA2P52926 109 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 FBXW4P57775 412 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 OR2B8PP59922 312 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 PAFAH1B2P68402 229 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 C2orf54Q08AI8 447 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 KIR2DS3Q14952 304 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 PSG5Q15238 335 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 TMED2Q15363 201 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 SLC1A5Q15758 541 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 ANKRD26P1Q6NSI1 321 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 ZNF549Q6P9A3 640 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 Q8N402 240 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 EID2Q8N6I1 236 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 TMEM251Q8N6I4 163 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 OR51A7Q8NH64 312 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 PSMB7Q99436 277 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 TRIM51Q9BSJ1 452 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 GAREM1Q9H706 876 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 PDFQ9HBH1 243 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 TMEM9BQ9NQ34 198 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 ZNF224Q9NZL3 707 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 ZNHIT2Q9UHR6 403 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 ANAPC1Q9H1A4 1944 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 BRWD1Q9NSI6 2320 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 F5P12259 2224 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 DOCK8Q8NF50 2099 aa4.33□□□□□ -1.72
VPS35P1-201ENST00000563400 A0A1B0GTH9 108 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 LOC285095A0A1B0GVY8 99 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 PRR23AA6NEV1 266 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 INAFM1C9JVW0 142 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 NPIPB8E9PQR5 432 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 J3QLI3 93 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 KMOO15229 486 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 SLC31A1O15431 190 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 SPRY3O43610 288 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 PI15O43692 258 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 TRAPPC6AO75865 159 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 HBE1P02100 147 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 CD48P09326 243 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 CDH1P12830 882 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 FOXN2P32314 431 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 LSM6P62312 80 aaKnown RBP4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 DYNC1I2Q13409 638 aaKnown RBP4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 ZNF260Q3ZCT1 412 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 TMEM215Q68D42 235 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 PVRIGQ6DKI7 326 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 OR52E8Q6IFG1 317 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 TUBA3EQ6PEY2 450 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 Q6ZS52 159 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 Q6ZSR9 355 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 ISCA2Q86U28 154 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 VRK3Q8IV63 474 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 SLC22A15Q8IZD6 547 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 ZNF567Q8N184 647 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 C11orf45Q8TAV5 145 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 PYROXD1Q8WU10 500 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 GATAD1Q8WUU5 269 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 C1orf54Q8WWF1 131 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 GTF3AQ92664 365 aaKnown RBP4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 RORBQ92753 470 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms