RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 SSX4O60224 188 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 HLA-HP01893 362 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 LCATP04180 440 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 ARSBP15848 533 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 CDK2P24941 298 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 THBS4P35443 961 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 ARR3P36575 388 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 BCAP31P51572 246 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 EFNB2P52799 333 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 TBR1Q16650 682 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 ACSF3Q4G176 576 aaPredicted RBP11.05□□□□□ -0.64
USP3-213ENST00000559711 TFAP2EQ6VUC0 442 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 COLCA1Q6ZS62 124 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 UTS2BQ765I0 119 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 OR1K1Q8NGR3 316 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 SSC4DQ8WTU2 575 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 C15orf40Q8WUR7 153 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 SMIM4Q8WVI0 70 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 PP6455Q8WZ26 134 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 BCL2L2Q92843 193 aaPredicted RBP11.05□□□□□ -0.64
USP3-213ENST00000559711 YIPF5Q969M3 257 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 PTX4Q96A99 478 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 ABHD17AQ96GS6 310 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 ZFP3Q96NJ6 502 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 C1QTNF5Q9BXJ0 243 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 RGCCQ9H4X1 137 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 CNTD2Q9H8S5 307 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 PLEKHA1Q9HB21 404 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 B3GNT2Q9NY97 397 aa11.05□□□□□ -0.64
USP3-213ENST00000559711 ANKRD11Q6UB99 2663 aaPredicted RBP11.05□□□□□ -0.64
USP3-213ENST00000559711 ZNF503-AS2A6NEH8 195 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 RRP8O43159 456 aaKnown RBP11.04□□□□□ -0.64
USP3-213ENST00000559711 EEF1E1O43324 174 aaKnown RBP11.04□□□□□ -0.64
USP3-213ENST00000559711 PFDN1O60925 122 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 CTAG2O75638 210 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 CNOT4O95628 575 aaKnown RBP11.04□□□□□ -0.64
USP3-213ENST00000559711 RANBP1P43487 201 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 KIR2DL2P43627 348 aaPredicted RBP11.04□□□□□ -0.64
USP3-213ENST00000559711 TMEM69Q5SWH9 247 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 NSUN5P2Q63ZY6 315 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 OR2A2Q6IF42 318 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 IZUMO1Q8IYV9 350 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 C9orf106Q8NAJ2 232 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 OR4D6Q8NGJ1 314 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 GPR137Q96N19 417 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 NKX3-1Q99801 234 aaPredicted RBP11.04□□□□□ -0.64
USP3-213ENST00000559711 RBFOX1Q9NWB1 397 aaKnown RBP11.04□□□□□ -0.64
USP3-213ENST00000559711 MGAQ8IWI9 3026 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 LOC100509620A0A075B734 347 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 IGKV1-9A0A0C4DH69 117 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 TMIGD3P0DMS9 266 aaPredicted RBP11.04□□□□□ -0.64
USP3-213ENST00000559711 PRF1P14222 555 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 GABRA1P14867 456 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 ZNF93P35789 620 aaPredicted RBP11.04□□□□□ -0.64
USP3-213ENST00000559711 MAP2K3P46734 347 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 INPP1P49441 399 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 RAB1AP62820 205 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 MRPS10P82664 201 aaKnown RBP11.04□□□□□ -0.64
USP3-213ENST00000559711 DGCR2P98153 550 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 SF3B4Q15427 424 aaKnown RBP eCLIP11.04□□□□□ -0.642e-6■■■■□ 21.4
USP3-213ENST00000559711 TMEM53Q6P2H8 277 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 DNM1P46Q6ZS02 220 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 BIVMQ86UB2 503 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 ZC3HAV1LQ96H79 300 aaKnown RBP11.04□□□□□ -0.64
USP3-213ENST00000559711 REEP6Q96HR9 211 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 NEDD4LQ96PU5 975 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 CHST5Q9GZS9 411 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 NOX3Q9HBY0 568 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 DIABLOQ9NR28 239 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 FBLN5Q9UBX5 448 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 PIGLQ9Y2B2 252 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 LAMA5O15230 3695 aa11.04□□□□□ -0.64
USP3-213ENST00000559711 DMXL2Q8TDJ6 3036 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 CIB4A0PJX0 185 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 GGT3PA6NGU5 568 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 GABARAPH6UMI1 98 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 LYRM1O43325 122 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 BPNT1O95861 308 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 FAM157BP0CG42 384 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 CD79AP11912 226 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 RAB6AP20340 208 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 TAS2R20P59543 309 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 QRFPP83859 136 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 KRTCAP3Q53RY4 240 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 ZNF57Q68EA5 555 aaPredicted RBP11.03□□□□□ -0.64
USP3-213ENST00000559711 MZT2BQ6NZ67 158 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 Q6ZT83 130 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 GCNT2Q8N0V5 402 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 DUSP18Q8NEJ0 188 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 SEMA6DQ8NFY4 1073 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 OR6K3Q8NGY3 331 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 SPSB4Q96A44 273 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 ITPKCQ96DU7 683 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 KCNK15Q9H427 330 aa11.03□□□□□ -0.64
USP3-213ENST00000559711 ACACAQ13085 2346 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 A0A0A6YYH2 397 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 MBD3L4A6NDZ8 208 aaPredicted RBP11.02□□□□□ -0.64
USP3-213ENST00000559711 MBD3L3A6NE82 208 aaPredicted RBP11.02□□□□□ -0.64
USP3-213ENST00000559711 MBD3L5A6NJ08 208 aaPredicted RBP11.02□□□□□ -0.64
USP3-213ENST00000559711 A6NJ64 397 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms