RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CCDC115Q96NT0 180 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PPP1R2P1Q96PQ5 205 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 RBP7Q96R05 134 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PITX2Q99697 317 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 TXN2Q99757 166 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 P2RY13Q9BPV8 354 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF670Q9BS34 389 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 MED18Q9BUE0 208 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PLA2G12AQ9BZM1 189 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 MIXL1Q9H2W2 232 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ASB7Q9H672 318 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 GORASP2Q9H8Y8 452 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 NMRAL1Q9HBL8 299 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 EML4Q9HC35 981 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 VAT1LQ9HCJ6 419 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ZDHHC4Q9NPG8 344 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CHRAC1Q9NRG0 131 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PIGVQ9NUD9 493 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 RBFOX1Q9NWB1 397 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SDHAF2Q9NX18 166 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CMTM6Q9NX76 183 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 RDH8Q9NYR8 311 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 COPZ2Q9P299 210 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SPASTQ9UBP0 616 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DUX4Q9UBX2 424 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SH3BGRL2Q9UJC5 107 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SCML1Q9UN30 329 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SNX6Q9UNH7 406 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 MGAT4BQ9UQ53 548 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 RNF6Q9Y252 685 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 BTRCQ9Y297 605 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SAMHD1Q9Y3Z3 626 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ORC6Q9Y5N6 252 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ALG5Q9Y673 324 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 V9GYH0 126 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 LAMB2P55268 1798 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PAPPAQ13219 1627 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 RBBP6Q7Z6E9 1792 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SYNJ2BP-COX16A0A087WUM0 186 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 GLYATL1P3A0A0U1RQE8 302 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 A0A0U1RQS6 177 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 A0A1W2PP18 115 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 C7orf66A4D0T2 115 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 PSMB11A5LHX3 300 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 G3V2T6 193 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SGK494L7N484 410 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 FXYD1O00168 92 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TLR4O00206 839 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SULT1C2O00338 296 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 PHYHO14832 338 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 BCKDKO14874 412 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 ARPC1BO15143 372 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CASC3O15234 703 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 PLA2G10O15496 165 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 FABP7O15540 132 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SGCEO43556 437 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 NME2P1O60361 137 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 EEDO75530 441 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SCRG1O75711 98 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CRTAPO75718 401 aaPredicted RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SC5DO75845 299 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 RBBP9O75884 186 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 KLF8O95600 359 aaPredicted RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 IFNA10P01566 189 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 IGHV3-48P01763 117 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 HEXBP07686 556 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 APRTP07741 180 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 FGF4P08620 206 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CSF3P09919 207 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 GLI3P10071 1580 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SLC2A1P11166 492 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 GNSP15586 552 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 RPS3P23396 243 aaKnown RBP eCLIP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 GADD45AP24522 165 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 PAX6P26367 422 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 ADORA2BP29275 332 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CA5AP35218 305 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 ATP5C1P36542 298 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 GPX4P36969 197 aaPredicted RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 RFC3P40938 356 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 ACTR1BP42025 376 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 RPL35P42766 123 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 MAP2K4P45985 399 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 GCLMP48507 274 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TGM4P49221 684 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 RORCP51449 518 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CNN1P51911 297 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 KPNA2P52292 529 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CDH4P55283 916 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 HSD17B7P56937 341 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TAS2R60P59551 318 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 LSM3P62310 102 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 PSPHP78330 225 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 DCDP81605 110 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SLC25A11Q02978 314 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 LIPEQ05469 1076 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CHRNB3Q05901 458 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SLAQ13239 276 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SCGB2A2Q13296 93 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 PLD1Q13393 1074 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms