RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TSPO2Q5TGU0 170 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 ZNF529Q6P280 563 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 CPEB2Q7Z5Q1 589 aaKnown RBP10.12□□□□□ -0.79
LDLR-208ENST00000558518 TMEM151BQ8IW70 566 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 FAM71E2Q8N5Q1 922 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 SUMF1Q8NBK3 374 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 OR13H1Q8NG92 308 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 OR51T1Q8NGJ9 327 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 TM4SF19Q96DZ7 209 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 ARHGAP5-AS1Q96IT6 56 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 S100A13Q99584 98 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 RCC2Q9P258 522 aaKnown RBP10.12□□□□□ -0.79
LDLR-208ENST00000558518 SLC5A6Q9Y289 635 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 SMIM10L1P0DMW3 83 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 FCGR2CP31995 323 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 OR3A4PP47883 348 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 SLC25A1P53007 311 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 RPL27P61353 136 aaKnown RBP10.11□□□□□ -0.79
LDLR-208ENST00000558518 PLCXD2Q0VAA5 305 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 ZNF345Q14585 488 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 C4orf17Q53FE4 359 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 LPCAT3Q6P1A2 487 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.11□□□□□ -0.79
LDLR-208ENST00000558518 C17orf78Q8N4C9 275 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 OR6S1Q8NH40 331 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 CTHRC1Q96CG8 243 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 SMIM10Q96HG1 83 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 MFRPQ9BY79 579 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 KLF15Q9UIH9 416 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 C7orf77A4D0Y5 90 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 CD74P04233 296 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 SLC25A4P12235 298 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 COL9A1P20849 921 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 ARL4DP49703 201 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 MECP2P51608 486 aaKnown RBP10.11□□□□□ -0.79
LDLR-208ENST00000558518 TMEM196Q5HYL7 178 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 LINC00114Q6XXX2 140 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 PGAP1Q75T13 922 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 PEG10Q86TG7 708 aaKnown RBP10.11□□□□□ -0.79
LDLR-208ENST00000558518 OR52N5Q8NH56 324 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 SGK3Q96BR1 496 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 ZNF775Q96BV0 537 aaPredicted RBP10.11□□□□□ -0.79
LDLR-208ENST00000558518 PHYHIPLQ96FC7 376 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 SEC11CQ9BY50 192 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 ALX4Q9H161 411 aaPredicted RBP10.11□□□□□ -0.79
LDLR-208ENST00000558518 MAFFQ9ULX9 164 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 MRPS28Q9Y2Q9 187 aaKnown RBP10.11□□□□□ -0.79
LDLR-208ENST00000558518 RFNGQ9Y644 331 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 SHANK1Q9Y566 2161 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 WDFY3Q8IZQ1 3526 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 DUS4LO95620 317 aaKnown RBP10.11□□□□□ -0.79
LDLR-208ENST00000558518 UNC119Q13432 240 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 PDCD1Q15116 288 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 CHRFAM7AQ494W8 412 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 ACTBL2Q562R1 376 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 WDSUB1Q8N9V3 476 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 TERB2Q8NHR7 220 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 HIST1H2BAQ96A08 127 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 PIGQQ9BRB3 760 aa10.11□□□□□ -0.79
LDLR-208ENST00000558518 IGKV1D-43A0A0B4J1Z2 117 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 ZNF727A8MUV8 499 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 ASAH2BP0C7U1 165 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 RPS4XP62701 263 aaKnown RBP10.1□□□□□ -0.79
LDLR-208ENST00000558518 DMWDQ09019 674 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 ZNF141Q15928 474 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 ZNF674Q2M3X9 581 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 EXD3Q8N9H8 876 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 FAM213BQ8TBF2 198 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 MRGPRFQ96AM1 343 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 ARL5BQ96KC2 179 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 BMFQ96LC9 184 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 PRO1933Q9H354 126 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 FBXL17Q9UF56 701 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 RAB22AQ9UL26 194 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 TMEM184BQ9Y519 407 aaPredicted RBP10.1□□□□□ -0.79
LDLR-208ENST00000558518 TMED7-TICAM2A0A0A6YYA0 188 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 WIPF3A6NGB9 483 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 UMAD1C9J7I0 102 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 FKTNO75072 461 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 OPRM1P35372 400 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 PPICP45877 212 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 SNU13P55769 128 aaKnown RBP10.1□□□□□ -0.79
LDLR-208ENST00000558518 PHLDA2Q53GA4 152 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 PARM1Q6UWI2 310 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 SLC25A43Q8WUT9 341 aaPredicted RBP10.1□□□□□ -0.79
LDLR-208ENST00000558518 RLN3Q8WXF3 142 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 C1orf198Q9H425 327 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.1□□□□□ -0.798e-6■■■■□ 26.5
LDLR-208ENST00000558518 ASH2LQ9UBL3 628 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 FLVCR1Q9Y5Y0 555 aa10.1□□□□□ -0.79
LDLR-208ENST00000558518 MEGF11A6BM72 1044 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 COLCA2A8K830 154 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 GPR37O15354 613 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 IFNA4P05014 189 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 RPL12P30050 165 aaKnown RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 RAB2AP61019 212 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 KIAA0141Q14154 515 aaPredicted RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 NSDHLQ15738 373 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 ZNF260Q3ZCT1 412 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 C14orf28Q4W4Y0 310 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms