RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PRRT1Q99946 306 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 ZNF649Q9BS31 505 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 LDAHQ9H6V9 325 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 MTFP1Q9UDX5 166 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 WRBO00258 174 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 OR7C1O76099 320 aaPredicted RBP13.26□□□□□ -0.29
CUX1-215ENST00000556210 NXPH3O95157 252 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 PMS2P2O95744 297 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 WNT11O96014 354 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 FLI1Q01543 452 aaPredicted RBP13.26□□□□□ -0.29
CUX1-215ENST00000556210 OR4D6Q8NGJ1 314 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 IFI44Q8TCB0 444 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 ASB5Q8WWX0 329 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 CHRDQ9H2X0 955 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 MRPS18BQ9Y676 258 aaKnown RBP13.26□□□□□ -0.29
CUX1-215ENST00000556210 IFNA21P01568 189 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 FOLR3P41439 243 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 TMEM71Q6P5X7 295 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 OR10R2Q8NGX6 335 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 PIGLQ9Y2B2 252 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 PLXNB3Q9ULL4 1909 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 PLSCR5A0PG75 271 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 CTDSPLO15194 276 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 CPN1P15169 458 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 HTR5AP47898 357 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 ZNF616Q08AN1 781 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 MFAP5Q13361 173 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 SMAD4Q13485 552 aaKnown RBP13.25□□□□□ -0.29
CUX1-215ENST00000556210 SNTB1Q13884 538 aaKnown RBP13.25□□□□□ -0.29
CUX1-215ENST00000556210 NHLRC3Q5JS37 347 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 H3F3CQ6NXT2 135 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 FOXRED1Q96CU9 486 aaPredicted RBP13.25□□□□□ -0.29
CUX1-215ENST00000556210 BORCS8Q96FH0 119 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 HIST1H2AAQ96QV6 131 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 C12orf57Q99622 126 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 DUSP23Q9BVJ7 150 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 BIN3Q9NQY0 253 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 A0A096LPE4 126 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 A0A1W2PPZ6 126 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 ZNF254O75437 659 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 PNLIPP16233 465 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 DCAF12L2Q5VW00 463 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 ANKRD37Q7Z713 158 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 SLC43A2Q8N370 569 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 SPEM1Q8N4L4 309 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 PNPLA2Q96AD5 504 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 SLC25A32Q9H2D1 315 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 MYOTQ9UBF9 498 aa13.25□□□□□ -0.29
CUX1-215ENST00000556210 TNFSF11O14788 317 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 BET1O15155 118 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 BGLAPP02818 100 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.24□□□□□ -0.29
CUX1-215ENST00000556210 ANKRD16Q6P6B7 361 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 BPIFCQ8NFQ6 507 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 OR5M9Q8NGP3 310 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 PPP1R1CQ8WVI7 109 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 MRPL22Q9NWU5 206 aaKnown RBP13.24□□□□□ -0.29
CUX1-215ENST00000556210 MFSD2BA6NFX1 497 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 MST1P26927 711 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 EPHA4P54764 986 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 EIF5AL1Q6IS14 154 aaKnown RBP13.24□□□□□ -0.29
CUX1-215ENST00000556210 RGS7BPQ6MZT1 257 aaPredicted RBP13.24□□□□□ -0.29
CUX1-215ENST00000556210 SEZ6L2Q6UXD5 910 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 EYSQ5T1H1 3165 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 B3GALNT1O75752 331 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 TPT1P13693 172 aaKnown RBP13.24□□□□□ -0.29
CUX1-215ENST00000556210 AKR7LQ8NHP1 331 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 ZNF75AQ96N20 296 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 LRFN5Q96NI6 719 aa13.24□□□□□ -0.29
CUX1-215ENST00000556210 OR5H15A6NDH6 313 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 VSIG10L2P0DP72 767 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 B4GALT1P15291 398 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 MGMTP16455 207 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 RAB5BP61020 215 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 PHLDA2Q53GA4 152 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 OPN5Q6U736 354 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 RAB11FIP2Q7L804 512 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 HSD17B13Q7Z5P4 300 aaPredicted RBP13.23□□□□□ -0.29
CUX1-215ENST00000556210 NAXDQ8IW45 347 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 ZNF524Q96C55 264 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 UCN2Q96RP3 112 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 TIMP4Q99727 224 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 NICN1Q9BSH3 213 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 TMPRSS13Q9BYE2 586 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 PRDM6Q9NQX0 595 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 PRELID3BQ9Y3B1 194 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 R4GN57 208 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 IGKV1D-43A0A0B4J1Z2 117 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 FAM166BA8MTA8 275 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 ADAM10O14672 748 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 MTRF1O75570 445 aaKnown RBP13.23□□□□□ -0.29
CUX1-215ENST00000556210 EXOSC6Q5RKV6 272 aaKnown RBP13.23□□□□□ -0.29
CUX1-215ENST00000556210 SLC25A21Q9BQT8 299 aaPredicted RBP13.23□□□□□ -0.29
CUX1-215ENST00000556210 NAA11Q9BSU3 229 aaPredicted RBP13.23□□□□□ -0.29
CUX1-215ENST00000556210 PIGMQ9H3S5 423 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 CALHM2Q9HA72 323 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 RAB22AQ9UL26 194 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 HMSDA8MTL9 139 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 HSPA12AO43301 675 aa13.23□□□□□ -0.29
CUX1-215ENST00000556210 CXCL13O43927 109 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms