RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 H2BFMP0C1H6 154 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 CD200P41217 278 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 GATA4P43694 442 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 ACTR3P61158 418 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 OR8G1Q15617 311 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 PRAMEF6Q5VXH4 476 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 C12orf73Q69YU5 71 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 RHOUQ7L0Q8 258 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 LRRC28Q86X40 367 aaPredicted RBP17.24■□□□□ 0.35
VTI1B-205ENST00000555543 TEAD3Q99594 435 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 ADAT1Q9BUB4 502 aaKnown RBP17.24■□□□□ 0.35
VTI1B-205ENST00000555543 OPA3Q9H6K4 179 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 BRD7Q9NPI1 651 aa17.24■□□□□ 0.35
VTI1B-205ENST00000555543 TRAV20A0A0B4J274 112 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 H3BNX3 289 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 ANPEPP15144 967 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 ALOX5APP20292 161 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 POLR2IP36954 125 aaKnown RBP17.23■□□□□ 0.35
VTI1B-205ENST00000555543 RAD23AP54725 363 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 EFNB1P98172 346 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 MPPED2Q15777 294 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 TMEM155Q4W5P6 130 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 LRRN1Q6UXK5 716 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 SLC16A9Q7RTY1 509 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 SGK3Q96BR1 496 aa17.23■□□□□ 0.35
VTI1B-205ENST00000555543 MRPL15Q9P015 296 aaKnown RBP17.23■□□□□ 0.35
VTI1B-205ENST00000555543 hCG_38984A0A1B0GV85 526 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 PRR32B1ATL7 298 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 IFNL4K9M1U5 179 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 APOC1P02654 83 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 PCMT1P22061 227 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 ZFP36P26651 326 aaKnown RBP17.22■□□□□ 0.35
VTI1B-205ENST00000555543 SEC61A1P61619 476 aaKnown RBP17.22■□□□□ 0.35
VTI1B-205ENST00000555543 LCN2P80188 198 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 FAM3AP98173 230 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 HOXA4Q00056 320 aaPredicted RBP17.22■□□□□ 0.35
VTI1B-205ENST00000555543 TIGD6Q17RP2 521 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 ZNF181Q2M3W8 571 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 GFOD2Q3B7J2 385 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 FAM201AQ5SY85 155 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 SPICQ8N5J4 248 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 CELF2-AS1Q8N7Q2 184 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 TCEANCQ8N8B7 351 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 REEP6Q96HR9 211 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 PKP2Q99959 881 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 PRRG3Q9BZD7 231 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 YIPF3Q9GZM5 350 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 UFSP2Q9NUQ7 469 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 LAMP5Q9UJQ1 280 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 COPS3Q9UNS2 423 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 LRP12Q9Y561 859 aa17.22■□□□□ 0.35
VTI1B-205ENST00000555543 ARHGAP32A7KAX9 2087 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 GMDSO60547 372 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 FAM20BO75063 409 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 PNPP00491 289 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 AVPP01185 164 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 MDH2P40926 338 aaKnown RBP17.21■□□□□ 0.35
VTI1B-205ENST00000555543 LCN1P1Q5VSP4 162 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 AADACL4Q5VUY2 407 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 FAHD2BQ6P2I3 314 aaPredicted RBP17.21■□□□□ 0.35
VTI1B-205ENST00000555543 C1orf229Q6ZS94 237 aaPredicted RBP17.21■□□□□ 0.35
VTI1B-205ENST00000555543 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.21■□□□□ 0.35
VTI1B-205ENST00000555543 KLHL36Q8N4N3 616 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 RFLNBQ8N5W9 214 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 OR52H1Q8NGJ2 320 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 TMEM163Q8TC26 289 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 Q8TCH9 128 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 FAHD2AQ96GK7 314 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 PGAM5Q96HS1 289 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 IL4I1Q96RQ9 567 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 GABARAPL3Q9BY60 117 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 TTTY10Q9BZA0 68 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 SLC22A4Q9H015 551 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 PATZ1Q9HBE1 687 aaKnown RBP17.21■□□□□ 0.35
VTI1B-205ENST00000555543 PCDHB10Q9UN67 800 aa17.21■□□□□ 0.35
VTI1B-205ENST00000555543 CEACAM18A8MTB9 384 aa17.2■□□□□ 0.34
VTI1B-205ENST00000555543 F5H0A9 414 aaPredicted RBP17.2■□□□□ 0.34
VTI1B-205ENST00000555543 PSMD9O00233 223 aa17.2■□□□□ 0.34
VTI1B-205ENST00000555543 PTBP3O95758 552 aaKnown RBP17.2■□□□□ 0.34
VTI1B-205ENST00000555543 SRP14P37108 136 aaKnown RBP17.2■□□□□ 0.34
VTI1B-205ENST00000555543 PSMA6P60900 246 aaKnown RBP17.2■□□□□ 0.34
VTI1B-205ENST00000555543 MEPCEQ7L2J0 689 aaKnown RBP17.2■□□□□ 0.34
VTI1B-205ENST00000555543 OSBPL10Q9BXB5 764 aa17.2■□□□□ 0.34
VTI1B-205ENST00000555543 OR10A2Q9H208 303 aa17.2■□□□□ 0.34
VTI1B-205ENST00000555543 RIBC2Q9H4K1 309 aa17.2■□□□□ 0.34
VTI1B-205ENST00000555543 PPP1R3EQ9H7J1 279 aa17.2■□□□□ 0.34
VTI1B-205ENST00000555543 SP140LQ9H930 580 aa17.2■□□□□ 0.34
VTI1B-205ENST00000555543 TMEM165Q9HC07 324 aa17.2■□□□□ 0.34
VTI1B-205ENST00000555543 NOP16Q9Y3C1 178 aaKnown RBP17.2■□□□□ 0.34
VTI1B-205ENST00000555543 PHF1O43189 567 aaPredicted RBP17.19■□□□□ 0.34
VTI1B-205ENST00000555543 GSK3AP49840 483 aa17.19■□□□□ 0.34
VTI1B-205ENST00000555543 SRSF2Q01130 221 aaKnown RBP17.19■□□□□ 0.34
VTI1B-205ENST00000555543 NXNL2Q5VZ03 156 aa17.19■□□□□ 0.34
VTI1B-205ENST00000555543 KRT77Q7Z794 578 aa17.19■□□□□ 0.34
VTI1B-205ENST00000555543 MUC20Q8N307 709 aaPredicted RBP17.19■□□□□ 0.34
VTI1B-205ENST00000555543 OR8B12Q8NGG6 310 aa17.19■□□□□ 0.34
VTI1B-205ENST00000555543 LYZL4Q96KX0 146 aa17.19■□□□□ 0.34
VTI1B-205ENST00000555543 CNN2Q99439 309 aaKnown RBP17.19■□□□□ 0.34
VTI1B-205ENST00000555543 TMPRSS13Q9BYE2 586 aa17.19■□□□□ 0.34
VTI1B-205ENST00000555543 ENOPH1Q9UHY7 261 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 162.1 ms