RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TRDMT1O14717 391 aaKnown RBP2.47□□□□□ -2.01
VPS29-205ENST00000548539 ZNF207O43670 478 aaKnown RBP2.47□□□□□ -2.01
VPS29-205ENST00000548539 TGM6O95932 706 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 GLAP06280 429 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 RSPH10BP0C881 870 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 PRKACAP17612 351 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 MYL9P24844 172 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 NPY1RP25929 384 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 MYCNOSP40205 109 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 GFERP55789 205 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 TAS2R31P59538 309 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 PAFAH1B2P68402 229 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 CRADDP78560 199 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 C5orf64Q2M2E5 130 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 ABCA11PQ4W5N1 156 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 CAVIN4Q5BKX8 364 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 Q5W150 140 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 OR2T5Q6IEZ7 315 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 SLC16A13Q7RTY0 426 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 RAB43Q86YS6 212 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 ZNF645Q8N7E2 425 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 FBXO36Q8NEA4 188 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 OR2T29Q8NH02 315 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 CIRBP-AS1Q8TBR5 109 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 GPR21Q99679 349 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 GGTLC1Q9BX51 225 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 SAMD10Q9BYL1 202 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 FANCEQ9HB96 536 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 FBXO8Q9NRD0 319 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 ZNF282Q9UDV7 671 aaPredicted RBP2.47□□□□□ -2.01
VPS29-205ENST00000548539 CHTOPQ9Y3Y2 248 aaKnown RBP2.47□□□□□ -2.01
VPS29-205ENST00000548539 PIKFYVEQ9Y2I7 2098 aa2.46□□□□□ -2.01
VPS29-205ENST00000548539 IGKV2-28A0A075B6P5 120 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 TRAV6A0A075B6T7 132 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 IGHV3OR16-9A0A0B4J2B5 98 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 H0YJW9 148 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 ZNF701M0R085 212 aaPredicted RBP2.46□□□□□ -2.02
VPS29-205ENST00000548539 BPY2O14599 106 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 SOCS1O15524 211 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 CHST10O43529 356 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 SERPINB7O75635 380 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 CCNKO75909 580 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 IGKV2D-28P01615 120 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 LINC00869P0C866 280 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 LOXP28300 417 aaPredicted RBP2.46□□□□□ -2.02
VPS29-205ENST00000548539 POLR2IP36954 125 aaKnown RBP2.46□□□□□ -2.02
VPS29-205ENST00000548539 AP1S2P56377 157 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 YWHAEP62258 255 aaKnown RBP2.46□□□□□ -2.02
VPS29-205ENST00000548539 EIF4EBP1Q13541 118 aaPredicted RBP2.46□□□□□ -2.02
VPS29-205ENST00000548539 TPRG1LQ5T0D9 272 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 LINC00336Q6ZUF6 198 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 OR4A15Q8NGL6 344 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 OR10G6Q8NH81 332 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 ASZ1Q8WWH4 475 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 BAALCQ8WXS3 180 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 GHSRQ92847 366 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 L3HYPDHQ96EM0 354 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 CDX2Q99626 313 aaPredicted RBP2.46□□□□□ -2.02
VPS29-205ENST00000548539 RBBP8Q99708 897 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 AGMATQ9BSE5 352 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 NECAP2Q9NVZ3 263 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 HMCN1Q96RW7 5635 aa2.46□□□□□ -2.02
VPS29-205ENST00000548539 TET2Q6N021 2002 aaPredicted RBP2.46□□□□□ -2.02
VPS29-205ENST00000548539 NEURL4Q96JN8 1562 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 IGLV4-60A0A075B6I1 120 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 IGKV1-27A0A075B6S5 117 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 A0A1W2PPV4 95 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 CENPXA8MT69 81 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 HACD1B0YJ81 288 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 H3BN98 237 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 HLA-DQA1P01909 254 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 PRB2P02812 416 aaPredicted RBP2.45□□□□□ -2.02
VPS29-205ENST00000548539 TACSTD2P09758 323 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 CISD3P0C7P0 127 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 ZNF688P0C7X2 276 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 OPRK1P41145 380 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 CLDN6P56747 220 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 ZFP1Q6P2D0 407 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 RTL4Q6ZR62 310 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 UBALD2Q8IYN6 164 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 TMEM256Q8N2U0 113 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 WDR31Q8NA23 367 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 UBAC2Q8NBM4 344 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 OR51L1Q8NGJ5 315 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 OR52K1Q8NGK4 314 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 OR1J4Q8NGS1 313 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 ZNF461Q8TAF7 563 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 RXFP4Q8TDU9 374 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 TOP1MTQ969P6 601 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 RERGQ96A58 199 aaPredicted RBP2.45□□□□□ -2.02
VPS29-205ENST00000548539 RCN3Q96D15 328 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 ZNF442Q9H7R0 627 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 REEP1Q9H902 201 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 FBXO6Q9NRD1 293 aaPredicted RBP2.45□□□□□ -2.02
VPS29-205ENST00000548539 OPN4Q9UHM6 478 aa2.45□□□□□ -2.02
VPS29-205ENST00000548539 KIF27Q86VH2 1401 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 A0A1B0GUH1 482 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 RAD1O60671 282 aa2.44□□□□□ -2.02
VPS29-205ENST00000548539 GLSO94925 669 aaPredicted RBP2.44□□□□□ -2.02
VPS29-205ENST00000548539 PTTG1O95997 202 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms