RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 HLA-DQA2P01906 255 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 NAA10P41227 235 aaPredicted RBP13.87□□□□□ -0.19
VPS29-204ENST00000548259 UBE2E1P51965 193 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 HOXA4Q00056 320 aaPredicted RBP13.87□□□□□ -0.19
VPS29-204ENST00000548259 RSPO1Q2MKA7 263 aaPredicted RBP13.87□□□□□ -0.19
VPS29-204ENST00000548259 OXLD1Q5BKU9 147 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 COQ5Q5HYK3 327 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 METTL21CQ5VZV1 264 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 SLC18B1Q6NT16 456 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 TBPL2Q6SJ96 375 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 BEND2Q8NDZ0 799 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 OR4F17Q8NGA8 305 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 OR51G2Q8NGK0 314 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 OR4C15Q8NGM1 316 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 OR8S1Q8NH09 359 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 ZNF799Q96GE5 643 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 FAM46AQ96IP4 442 aaKnown RBP13.87□□□□□ -0.19
VPS29-204ENST00000548259 OR4F4Q96R69 305 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 SIKE1Q9BRV8 207 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 TMEM120AQ9BXJ8 343 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 NPFFR1Q9GZQ6 430 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 RNPEPL1Q9HAU8 725 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 GID8Q9NWU2 228 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 SIGLEC7Q9Y286 467 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 MAB21L2Q9Y586 359 aa13.87□□□□□ -0.19
VPS29-204ENST00000548259 IGHV3OR15-7A0A075B7D8 119 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 A0A1W2PRD5 423 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 A0A1W2PRF3 423 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 A0A1W2PRM7 423 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 BBIP1A8MTZ0 92 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 H3BUX3 64 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 J3KTA2 159 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 TXNDC12O95881 172 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 LHBP01229 141 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 TROVE2P10155 538 aaKnown RBP eCLIP13.86□□□□□ -0.19
VPS29-204ENST00000548259 ZNF26P17031 533 aaPredicted RBP13.86□□□□□ -0.19
VPS29-204ENST00000548259 CDKN2AP42771 156 aaKnown RBP13.86□□□□□ -0.19
VPS29-204ENST00000548259 DBPQ10586 325 aaPredicted RBP13.86□□□□□ -0.19
VPS29-204ENST00000548259 POU4F2Q12837 409 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 IFI44LQ53G44 452 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 CFAP77Q6ZQR2 320 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 ZNF826PQ6ZT77 177 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 PTCHD4Q6ZW05 846 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 FKBP9P1Q75LS8 142 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 LINC00346Q8IVM7 164 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 SLC26A10Q8NG04 563 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 C12orf43Q96C57 262 aaKnown RBP13.86□□□□□ -0.19
VPS29-204ENST00000548259 TSSK2Q96PF2 358 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 CCL13Q99616 98 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 NSRP1Q9H0G5 558 aaKnown RBP13.86□□□□□ -0.19
VPS29-204ENST00000548259 METTL8Q9H825 291 aaKnown RBP13.86□□□□□ -0.19
VPS29-204ENST00000548259 SRA1Q9HD15 236 aaKnown RBP13.86□□□□□ -0.19
VPS29-204ENST00000548259 AURKAIP1Q9NWT8 199 aaPredicted RBP13.86□□□□□ -0.19
VPS29-204ENST00000548259 DNAJB11Q9UBS4 358 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 KCNG2Q9UJ96 466 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 PRPF19Q9UMS4 504 aaKnown RBP13.86□□□□□ -0.19
VPS29-204ENST00000548259 B9D1Q9UPM9 204 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 FOXJ3Q9UPW0 622 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 AP3M1Q9Y2T2 418 aa13.86□□□□□ -0.19
VPS29-204ENST00000548259 IGLV1-36A0A0B4J1U3 117 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 ANKRD30BLA7E2S9 258 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 MRASO14807 208 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 FFAR1O14842 300 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 TIPRLO75663 272 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 ZNF682O95780 498 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 VSIG10L2P0DP72 767 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 DDOSTP39656 456 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 ZNF92Q03936 586 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 MAPRE2Q15555 327 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 PCK2Q16822 640 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 WDR38Q5JTN6 314 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 LIAT1Q6ZQX7 453 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 NAA40Q86UY6 237 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 LRRC29Q8WV35 223 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 H1FXQ92522 213 aaKnown RBP13.85□□□□□ -0.19
VPS29-204ENST00000548259 RSRC1Q96IZ7 334 aaKnown RBP13.85□□□□□ -0.19
VPS29-204ENST00000548259 ERMAPQ96PL5 475 aaPredicted RBP13.85□□□□□ -0.19
VPS29-204ENST00000548259 SSX3Q99909 188 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 TOR3AQ9H497 397 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 CYB5R1Q9UHQ9 305 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 SIGLEC9Q9Y336 463 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 SF3B6Q9Y3B4 125 aaKnown RBP13.85□□□□□ -0.19
VPS29-204ENST00000548259 FAM32AQ9Y421 112 aaKnown RBP13.85□□□□□ -0.19
VPS29-204ENST00000548259 SNX13Q9Y5W8 968 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 NOTCH3Q9UM47 2321 aa13.85□□□□□ -0.19
VPS29-204ENST00000548259 NKX6-3A6NJ46 265 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 M0R1W7 72 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 FXYD1O00168 92 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 IMPA2O14732 288 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 PTP4A3O75365 173 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 FBXO24O75426 580 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 ZNF823P16415 610 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 PAICSP22234 425 aaKnown RBP13.84□□□□□ -0.19
VPS29-204ENST00000548259 GSK3BP49841 420 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 SLC7A2P52569 658 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 IKZF1Q13422 519 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 RFX4Q33E94 735 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 NSUN5P1Q3KNT7 163 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 AGBL2Q5U5Z8 902 aa13.84□□□□□ -0.19
VPS29-204ENST00000548259 DRAM2Q6UX65 266 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms