RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SLC29A1Q99808 456 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 SULT4A1Q9BR01 284 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 C1orf198Q9H425 327 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 SAMSN1Q9NSI8 373 aaKnown RBP2.01□□□□□ -2.09
CD44-233ENST00000531141 HRASLS2Q9NWW9 162 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 UXTQ9UBK9 157 aaPredicted RBP2.01□□□□□ -2.09
CD44-233ENST00000531141 VANGL2Q9ULK5 521 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 HYOU1Q9Y4L1 999 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 TPRP12270 2363 aaKnown RBP2.01□□□□□ -2.09
CD44-233ENST00000531141 GPR179Q6PRD1 2367 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 CPSF1Q10570 1443 aaKnown RBP2□□□□□ -2.09
CD44-233ENST00000531141 TOGARAM1Q9Y4F4 1720 aa2□□□□□ -2.09
CD44-233ENST00000531141 USP42Q9H9J4 1324 aaKnown RBP2□□□□□ -2.09
CD44-233ENST00000531141 MAST4O15021 2626 aa2□□□□□ -2.09
CD44-233ENST00000531141 DCHS1Q96JQ0 3298 aa2□□□□□ -2.09
CD44-233ENST00000531141 MPHOSPH10O00566 681 aaKnown RBP2□□□□□ -2.09
CD44-233ENST00000531141 AIM2O14862 343 aa2□□□□□ -2.09
CD44-233ENST00000531141 SOCS1O15524 211 aa2□□□□□ -2.09
CD44-233ENST00000531141 FKBP6O75344 327 aa2□□□□□ -2.09
CD44-233ENST00000531141 WBP4O75554 376 aaKnown RBP2□□□□□ -2.09
CD44-233ENST00000531141 IL4P05112 153 aa2□□□□□ -2.09
CD44-233ENST00000531141 CT45A6P0DMU7 189 aa2□□□□□ -2.09
CD44-233ENST00000531141 CT45A5P0DMU8 189 aa2□□□□□ -2.09
CD44-233ENST00000531141 CT45A7P0DMV0 189 aa2□□□□□ -2.09
CD44-233ENST00000531141 ZNF24P17028 368 aa2□□□□□ -2.09
CD44-233ENST00000531141 RAB3AP20336 220 aa2□□□□□ -2.09
CD44-233ENST00000531141 SLC1A1P43005 524 aa2□□□□□ -2.09
CD44-233ENST00000531141 HCAR3P49019 387 aa2□□□□□ -2.09
CD44-233ENST00000531141 RAB10P61026 200 aa2□□□□□ -2.09
CD44-233ENST00000531141 CCNA1P78396 465 aa2□□□□□ -2.09
CD44-233ENST00000531141 PRR3P79522 188 aaKnown RBP2□□□□□ -2.09
CD44-233ENST00000531141 XKR7Q5GH72 579 aa2□□□□□ -2.09
CD44-233ENST00000531141 CT45A1Q5HYN5 189 aa2□□□□□ -2.09
CD44-233ENST00000531141 PPM1LQ5SGD2 360 aa2□□□□□ -2.09
CD44-233ENST00000531141 PRR9Q5T870 116 aa2□□□□□ -2.09
CD44-233ENST00000531141 AP1ARQ63HQ0 302 aa2□□□□□ -2.09
CD44-233ENST00000531141 SAXO2Q658L1 398 aa2□□□□□ -2.09
CD44-233ENST00000531141 SLC8B1Q6J4K2 584 aa2□□□□□ -2.09
CD44-233ENST00000531141 TAS2R42Q7RTR8 314 aa2□□□□□ -2.09
CD44-233ENST00000531141 CDKL3Q8IVW4 592 aaPredicted RBP2□□□□□ -2.09
CD44-233ENST00000531141 NECAP1Q8NC96 275 aa2□□□□□ -2.09
CD44-233ENST00000531141 OR4K5Q8NGD3 323 aa2□□□□□ -2.09
CD44-233ENST00000531141 OR9A2Q8NGT5 310 aa2□□□□□ -2.09
CD44-233ENST00000531141 LILRB4Q8NHJ6 448 aa2□□□□□ -2.09
CD44-233ENST00000531141 CT45A3Q8NHU0 189 aa2□□□□□ -2.09
CD44-233ENST00000531141 LINC01560Q8TB33 94 aa2□□□□□ -2.09
CD44-233ENST00000531141 C17orf50Q8WW18 174 aa2□□□□□ -2.09
CD44-233ENST00000531141 TMEM230Q96A57 120 aa2□□□□□ -2.09
CD44-233ENST00000531141 PTX4Q96A99 478 aa2□□□□□ -2.09
CD44-233ENST00000531141 DCPSQ96C86 337 aaKnown RBP2□□□□□ -2.09
CD44-233ENST00000531141 RASD2Q96D21 266 aa2□□□□□ -2.09
CD44-233ENST00000531141 DNAJC1Q96KC8 554 aaKnown RBP2□□□□□ -2.09
CD44-233ENST00000531141 OR5B12Q96R08 314 aa2□□□□□ -2.09
CD44-233ENST00000531141 CENPKQ9BS16 269 aa2□□□□□ -2.09
CD44-233ENST00000531141 NUP58Q9BVL2 599 aa2□□□□□ -2.09
CD44-233ENST00000531141 LGALS13Q9UHV8 139 aa2□□□□□ -2.09
CD44-233ENST00000531141 SMG6Q86US8 1419 aaKnown RBP2□□□□□ -2.09
CD44-233ENST00000531141 NAV2Q8IVL1 2488 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 XIRP2A4UGR9 3374 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 IGLV1-36A0A0B4J1U3 117 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 SMCO3A2RU48 225 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 XKRY2A2RUG3 117 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 SIRPB1O00241 398 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 CIB2O75838 187 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 HLA-DQA1P01909 254 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 CD74P04233 296 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 ERGP11308 486 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 SLC11A1P49279 550 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 P2RX1P51575 399 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 RND2P52198 227 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 SYNJ2BPP57105 145 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 VSX2P58304 361 aaPredicted RBP1.99□□□□□ -2.09
CD44-233ENST00000531141 PPP1CBP62140 327 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 IFT88Q13099 833 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 SLC22A9Q8IVM8 553 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 OSR2Q8N2R0 312 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 ZNF488Q96MN9 340 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 PLIN2Q99541 437 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 OR51M1Q9H341 326 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 OR52D1Q9H346 318 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 DOT1LQ8TEK3 1739 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 VPS8Q8N3P4 1428 aa1.99□□□□□ -2.09
CD44-233ENST00000531141 USP9XQ93008 2570 aaPredicted RBP1.99□□□□□ -2.09
CD44-233ENST00000531141 SLX4Q8IY92 1834 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 MAP3K19Q56UN5 1328 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 MON2Q7Z3U7 1717 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 ZNF716A6NP11 495 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 C9JVG2 144 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 DNASE2O00115 360 aaPredicted RBP1.98□□□□□ -2.09
CD44-233ENST00000531141 CLOCKO15516 846 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 CHST1O43916 411 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 RDH16O75452 317 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 OR2J3O76001 311 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 ZNF735P0CB33 412 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 CCL5P13501 91 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 GGT1P19440 569 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 PRRX1P54821 245 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 PRMT2P55345 433 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 RAET1LQ5VY80 246 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 ZFP1Q6P2D0 407 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms