RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SLC6A1P30531 599 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 EDDM3BP56851 147 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 IRF3Q14653 427 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 CD226Q15762 336 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 ZNF79Q15937 498 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 FXNQ16595 210 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 AANATQ16613 207 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 MUC20Q8N307 709 aaPredicted RBP11.4□□□□□ -0.58
USP53-209ENST00000514665 GALNT16Q8N428 558 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 TERB2Q8NHR7 220 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 MAGT1Q9H0U3 335 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 PLK3Q9H4B4 646 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 UFSP2Q9NUQ7 469 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 FOXJ3Q9UPW0 622 aa11.4□□□□□ -0.58
USP53-209ENST00000514665 YBX2Q9Y2T7 364 aaKnown RBP11.4□□□□□ -0.58
USP53-209ENST00000514665 HSPB2A8KAH6 182 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 RER1O15258 196 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 MPPED1O15442 326 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 HBE1P02100 147 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 CXCL3P19876 107 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 FKBP2P26885 142 aaKnown RBP11.4□□□□□ -0.59
USP53-209ENST00000514665 PLGLAQ15195 96 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 HSPB2Q16082 182 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 PLXDC2Q6UX71 529 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 TMEM182Q6ZP80 229 aaPredicted RBP11.4□□□□□ -0.59
USP53-209ENST00000514665 LRRTM1Q86UE6 522 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 OR1L3Q8NH93 324 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 ROBO4Q8WZ75 1007 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 MUCL1Q96DR8 90 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 GNRHR2Q96P88 292 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 CRLF2Q9HC73 371 aa11.4□□□□□ -0.59
USP53-209ENST00000514665 CACNA1DQ01668 2161 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 COL11A1P12107 1806 aaPredicted RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 KIF13BQ9NQT8 1826 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 RAB27BO00194 218 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 GCM2O75603 506 aaPredicted RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 PIAS2O75928 621 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 SNCAP37840 140 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 PDCD1Q15116 288 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 GSG1Q2KHT4 349 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 DMKNQ6E0U4 476 aaPredicted RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 OR52H1Q8NGJ2 320 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 OR51A2Q8NGJ7 313 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 TSPAN32Q96QS1 320 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 DLL4Q9NR61 685 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 TIMM10BQ9Y5J6 103 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 KIR2DS1A0A191URI9 304 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 DEGS1O15121 323 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 TDRD6O60522 2096 aaKnown RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 DUSP1P28562 367 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 KIR2DS4P43632 304 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 ELLP55199 621 aaPredicted RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 KIR2DS1Q14954 304 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 TOMM34Q15785 309 aaPredicted RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 TMEM268Q5VZI3 342 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 B3GNTL1Q67FW5 361 aaPredicted RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 OR10G3Q8NGC4 313 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 GPBAR1Q8TDU6 330 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 RTN4IP1Q8WWV3 396 aaPredicted RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 TTC9Q92623 222 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 SPACA9Q96E40 222 aaPredicted RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 SPACA1Q9HBV2 294 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 GFOD1Q9NXC2 390 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 MEIKINA0A087WXM9 373 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 BHLHE40O14503 412 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 LRP3O75074 770 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 KITLGP21583 273 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 TAGLN2P37802 199 aaKnown RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 CLN3Q13286 438 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 SSX2Q16385 188 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 BATFQ16520 125 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 ZXDCQ2QGD7 858 aaPredicted RBP11.39□□□□□ -0.59
USP53-209ENST00000514665 OR2B11Q5JQS5 317 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 TMEM71Q6P5X7 295 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 TFAP2EQ6VUC0 442 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 VASH2Q86V25 355 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 TDHQ8IZJ6 230 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 ST3GAL6Q9Y274 331 aa11.39□□□□□ -0.59
USP53-209ENST00000514665 SNRNP200O75643 2136 aaKnown RBP11.38□□□□□ -0.59
USP53-209ENST00000514665 C5orf49A4QMS7 147 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 IMPA2O14732 288 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 JTBO76095 146 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 IL5P05113 134 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 PTAFRP25105 342 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 ECI1P42126 302 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 CSRP3P50461 194 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 CCL11P51671 97 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 BAXQ07812 192 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 SP6Q3SY56 376 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 CDONQ4KMG0 1287 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 DUSP18Q8NEJ0 188 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 HEYLQ9NQ87 328 aaPredicted RBP11.38□□□□□ -0.59
USP53-209ENST00000514665 ZNF724A8MTY0 619 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 H3BMH7 237 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 SPRY1O43609 319 aaPredicted RBP11.38□□□□□ -0.59
USP53-209ENST00000514665 H2AFB1P0C5Y9 115 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 BCKDHBP21953 392 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 RAB11AP62491 216 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 HAGHQ16775 308 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 ZNF610Q8N9Z0 462 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms