RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CHCHD7Q9BUK0 85 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 CALN1Q9BXU9 219 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 SLC7A5P2Q9GIP4 190 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 RRAGDQ9NQL2 400 aaPredicted RBP1.72□□□□□ -2.13
VPS50-219ENST00000495039 CLN6Q9NWW5 311 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 SAR1BQ9Y6B6 198 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 ITGB4P16144 1822 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 KCNE1BA0A087WTH5 132 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 IGHV1-3A0A0C4DH29 117 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 A0A1B0GUH1 482 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 TMEM120BA0PK00 339 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 ZNF233A6NK53 670 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 GABRPO00591 440 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 CACNG3O60359 315 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 SERPINB7O75635 380 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 MT-ND4P03905 459 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 PGA4P0DJD7 388 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 PGA3P0DJD8 388 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 PGA5P0DJD9 388 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 TCP1P17987 556 aaKnown RBP1.71□□□□□ -2.14
VPS50-219ENST00000495039 PFN2P35080 140 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 RAB9AP51151 201 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 UBE2E1P51965 193 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 NDUFA8P51970 172 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 CUL2Q13617 745 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 DMC1Q14565 340 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 TRMT5Q32P41 509 aaKnown RBP1.71□□□□□ -2.14
VPS50-219ENST00000495039 ZNF829Q3KNS6 432 aaPredicted RBP1.71□□□□□ -2.14
VPS50-219ENST00000495039 STUMQ69YW2 141 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 TMEM53Q6P2H8 277 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 CD300LGQ6UXG3 332 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 RTL4Q6ZR62 310 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 ERO1BQ86YB8 467 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 C19orf18Q8NEA5 215 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 BPIFCQ8NFQ6 507 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 CCDC148Q8NFR7 591 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 RERGQ96A58 199 aaPredicted RBP1.71□□□□□ -2.14
VPS50-219ENST00000495039 RPEQ96AT9 228 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 DYNLL2Q96FJ2 89 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 IP6K3Q96PC2 410 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 BPIFA3Q9BQP9 254 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 C11orf70Q9BRQ4 267 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 TOLLIPQ9H0E2 274 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 PIGUQ9H490 435 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 ZSCAN16Q9H4T2 348 aaPredicted RBP1.71□□□□□ -2.14
VPS50-219ENST00000495039 RGS18Q9NS28 235 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 RCL1Q9Y2P8 373 aaKnown RBP1.71□□□□□ -2.14
VPS50-219ENST00000495039 INSRP06213 1382 aa1.71□□□□□ -2.14
VPS50-219ENST00000495039 ANKRD12Q6UB98 2062 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 IGHV3OR16-8A0A075B7F1 116 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 TEX46H3BTG2 121 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 DNALI1O14645 258 aaPredicted RBP1.7□□□□□ -2.14
VPS50-219ENST00000495039 RAD1O60671 282 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 GATBO75879 557 aaKnown RBP1.7□□□□□ -2.14
VPS50-219ENST00000495039 HLA-HP01893 362 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 GSTM3P21266 225 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 PCK1P35558 622 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 SLC1A2P43004 574 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 GDI2P50395 445 aaKnown RBP1.7□□□□□ -2.14
VPS50-219ENST00000495039 FABP6P51161 128 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 UBE2MP61081 183 aaKnown RBP1.7□□□□□ -2.14
VPS50-219ENST00000495039 IGFBP7Q16270 282 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 SLC25A35Q3KQZ1 300 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 OPN5Q6U736 354 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 SPINT4Q6UDR6 99 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 CASP12Q6UXS9 341 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 ZNF101Q8IZC7 436 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 VKORC1L1Q8N0U8 176 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 PQLC3Q8N755 202 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 SLC35G3Q8N808 338 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 LINC00304Q8N9R0 145 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 TMEM104Q8NE00 496 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 OR56A4Q8NGH8 313 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 OR1P1Q8NH06 330 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 RXFP4Q8TDU9 374 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 GHSRQ92847 366 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 RAB1CQ92928 201 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 SGTBQ96EQ0 304 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 WDR34Q96EX3 536 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 GPR21Q99679 349 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 UQCC2Q9BRT2 126 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 HES2Q9Y543 173 aa1.7□□□□□ -2.14
VPS50-219ENST00000495039 IGKV1-27A0A075B6S5 117 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 IGKV3D-11A0A0A0MRZ8 115 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 CEACAM18A8MTB9 384 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 ANKRD65E5RJM6 399 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 MANBAO00462 879 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 FCN3O75636 299 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 RPN2P04844 631 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 IFNW1P05000 195 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 HSPD1P10809 573 aaKnown RBP1.69□□□□□ -2.14
VPS50-219ENST00000495039 RAB5AP20339 215 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 CD70P32970 193 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 GGT2P36268 569 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 PPICP45877 212 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 SERPINB8P50452 374 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 AP1S2P56377 157 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 RBX1P62877 108 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 FLI1Q01543 452 aaPredicted RBP1.69□□□□□ -2.14
VPS50-219ENST00000495039 IFITM3Q01628 133 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms