RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 A0A1B0GVI7 797 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 A0A1W2PPK0 400 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 H3BSH0 61 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 TBX1O43435 398 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 XRCC2O43543 280 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 SYT7O43581 403 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 ZG16O60844 167 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 RAF1P04049 648 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 CLEC2LP0C7M8 214 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 OCM2P0CE71 109 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 CD37P11049 281 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 PPP3CBP16298 524 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 ZNF182P17025 639 aaPredicted RBP7.11□□□□□ -1.27
USP4-210ENST00000483212 ADRA2CP18825 462 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 CCNOP22674 350 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 ACKR3P25106 362 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 CALRP27797 417 aaKnown RBP7.11□□□□□ -1.27
USP4-210ENST00000483212 SDC2P34741 201 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 RPS19P39019 145 aaKnown RBP7.11□□□□□ -1.27
USP4-210ENST00000483212 SERPINB10P48595 397 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 MTNR1BP49286 362 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 ZNF83P51522 516 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 FAM3AP98173 230 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 SORDQ00796 357 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 NAAAQ02083 359 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 ZNF92Q03936 586 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 OR8B8Q15620 311 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 TMEM255AQ5JRV8 349 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 CEP78Q5JTW2 689 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 PAMR1Q6UXH9 720 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 USP43Q70EL4 1123 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 LRRTM1Q86UE6 522 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 ZNF808Q8N4W9 903 aaPredicted RBP7.11□□□□□ -1.27
USP4-210ENST00000483212 PARP16Q8N5Y8 322 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 CCDC54Q8NEL0 328 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 KBTBD8Q8NFY9 601 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 OR1J2Q8NGS2 313 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 TMEM106AQ96A25 262 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 ADAT3Q96EY9 351 aaPredicted RBP7.11□□□□□ -1.27
USP4-210ENST00000483212 REEP6Q96HR9 211 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 FAM71F1Q96KD3 344 aaPredicted RBP7.11□□□□□ -1.27
USP4-210ENST00000483212 KCTD7Q96MP8 289 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 GFI1Q99684 422 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 SLC30A2Q9BRI3 323 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 REPIN1Q9BWE0 567 aaKnown RBP7.11□□□□□ -1.27
USP4-210ENST00000483212 BARHL1Q9BZE3 327 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 RGCCQ9H4X1 137 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 NPDC1Q9NQX5 325 aaPredicted RBP7.11□□□□□ -1.27
USP4-210ENST00000483212 ZNF391Q9UJN7 358 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 DHDHQ9UQ10 334 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 GSTK1Q9Y2Q3 226 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 STARD10Q9Y365 291 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 N6AMT1Q9Y5N5 214 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 PMF1-BGLAPU3KQ54 211 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 HIVEP3Q5T1R4 2406 aa7.11□□□□□ -1.27
USP4-210ENST00000483212 UBR5O95071 2799 aaPredicted RBP7.1□□□□□ -1.27
USP4-210ENST00000483212 ANKRD61A6NGH8 418 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 DHRS7CA6NNS2 312 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 DHRS3O75911 302 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 ARL6IP5O75915 188 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 CDRT1O95170 752 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 CLDN14O95500 239 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 IL1AP01583 271 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 MAPK3P27361 379 aaPredicted RBP7.1□□□□□ -1.27
USP4-210ENST00000483212 NKX6-1P78426 367 aaPredicted RBP7.1□□□□□ -1.27
USP4-210ENST00000483212 SPOCK1Q08629 439 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 GK2Q14410 553 aaPredicted RBP7.1□□□□□ -1.27
USP4-210ENST00000483212 GFOD2Q3B7J2 385 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 HSD17B12Q53GQ0 312 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 TMEM42Q69YG0 159 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 XKRXQ6PP77 449 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 SSX8Q7RTT4 187 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 LYPD6Q86Y78 171 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 OR13C3Q8NGS6 347 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 CA5BP1Q8WTZ4 195 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 TSEN15Q8WW01 171 aaKnown RBP7.1□□□□□ -1.27
USP4-210ENST00000483212 AKAP1Q92667 903 aaKnown RBP eCLIP7.1□□□□□ -1.27
USP4-210ENST00000483212 THRSPQ92748 146 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 MUCL1Q96DR8 90 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 WFIKKN1Q96NZ8 548 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 DCUN1D5Q9BTE7 237 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 SLIRPQ9GZT3 109 aaKnown RBP7.1□□□□□ -1.27
USP4-210ENST00000483212 ZCCHC4Q9H5U6 513 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 CDH20Q9HBT6 801 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 TAS2R4Q9NYW5 299 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 PTTG3PQ9NZH4 202 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 PTTG2Q9NZH5 202 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 CRIM1Q9NZV1 1036 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 RHBDD3Q9Y3P4 386 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 ADGRG4Q8IZF6 3080 aa7.1□□□□□ -1.27
USP4-210ENST00000483212 ESPL1Q14674 2120 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 MYO7BQ6PIF6 2116 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 PCNX1Q96RV3 2341 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 IGKV1-9A0A0C4DH69 117 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 DPRXA6NFQ7 191 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 WIPF3A6NGB9 483 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 M0R1B8 84 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 FAM157BP0CG42 384 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 RNF224P0DH78 156 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 ZNF12P17014 697 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms