RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SURF2Q15527 256 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 PRAMEF5Q5TYX0 476 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 PRAMEF6Q5VXH4 476 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 Q6ZSR6 202 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 Q6ZSR9 355 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 OR2M3Q8NG83 312 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 BCL2L2Q92843 193 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 NARFLQ9H6Q4 476 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 SCN7AQ01118 1682 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 RALGAPA2Q2PPJ7 1873 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 COL22A1Q8NFW1 1626 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM238LA0A1B0GVL6 79 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 A6NJY4 79 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 PMS2P11Q13670 270 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 MRPS24Q96EL2 167 aaKnown RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 RNF2Q99496 336 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 PLXNB2O15031 1838 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 GNG4P50150 75 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 IL13RA2Q14627 380 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 FAM71E1Q6IPT2 247 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 SLC26A10Q8NG04 563 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 WSB1Q9Y6I7 421 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 H0YGG7 62 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 PGA4P0DJD7 388 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 PGA5P0DJD9 388 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 SCGB1A1P11684 91 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 CLEC18AA5D8T8 446 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 FABP4P15090 132 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 CST5P28325 142 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 AGFG1P52594 562 aaKnown RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 EXOSC7Q15024 291 aaKnown RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 RPEL1Q2QD12 228 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 TRIM61Q5EBN2 209 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 ERASQ7Z444 233 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 CLEC18CQ8NCF0 446 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 ZC3HAV1LQ96H79 300 aaKnown RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 DOK2O60496 412 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 CSF2RBP32927 897 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 NOVP48745 357 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 ASCL1P50553 236 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 PCBP4P57723 403 aaKnown RBP12.11□□□□□ -0.47
COL6A3-209ENST00000472056 RNF165Q6ZSG1 346 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 WDR89Q96FK6 387 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-209ENST00000472056 NPAS1Q99742 590 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 COMMD5Q9GZQ3 224 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 CXorf36Q9H7Y0 433 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 ANKRD61A6NGH8 418 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 LRP3O75074 770 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 HAND1O96004 215 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 ZNF345Q14585 488 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 IER5LQ5T953 404 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 STUMQ69YW2 141 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 ZPBPQ9BS86 351 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 BARX1Q9HBU1 254 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-209ENST00000472056 MEIKINA0A087WXM9 373 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 MBLAC1A4D2B0 266 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-209ENST00000472056 M0R1X1 148 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 SLC17A2O00624 439 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 GPX5O75715 221 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 ETFDHQ16134 617 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM255BQ8WV15 326 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 MVB12AQ96EY5 273 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 UTP23Q9BRU9 249 aaKnown RBP12.11□□□□□ -0.47
COL6A3-209ENST00000472056 ANGPTL4Q9BY76 406 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 TRPM3Q9HCF6 1732 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-209ENST00000472056 FZD9O00144 591 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 HPP00738 406 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 GDF1P27539 372 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 P2RY2P41231 377 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 SMAGPQ0VAQ4 97 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 LRP11Q86VZ4 500 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 SLC45A2Q9UMX9 530 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 BOLA1Q9Y3E2 137 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 CTDSPLO15194 276 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 PMCHP20382 165 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 CLDN17P56750 224 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 ZNF528Q3MIS6 628 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 LIPNQ5VXI9 398 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 C11orf42Q8N5U0 333 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 GALMQ96C23 342 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 POM121L2Q96KW2 1035 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 LRRC3BQ96PB8 259 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 ATP5SQ99766 215 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 IKZF5Q9H5V7 419 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 PSENENQ9NZ42 101 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 WTIPA6NIX2 430 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-209ENST00000472056 HLA-BQ31612 363 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM178AQ8NBL3 297 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 KIR3DX1Q9H7L2 352 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 SLCO1B1Q9Y6L6 691 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 DGCR2P98153 550 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 FBXW5Q969U6 566 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 SPSB1Q96BD6 273 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 TM4SF18Q96CE8 201 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 TIMM10BQ9Y5J6 103 aa12.11□□□□□ -0.47
COL6A3-209ENST00000472056 IGLV3-10A0A075B6K4 115 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 ARPC3O15145 178 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 RRP8O43159 456 aaKnown RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 STAC2Q6ZMT1 411 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms