RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 CYP4Z1Q86W10 505 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.11□□□□□ -1.43
USP54-208ENST00000461520 NANPQ8TBE9 248 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 COG8Q96MW5 612 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 GAL3ST1Q99999 423 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 NDEL1Q9GZM8 345 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 EFCAB1Q9HAE3 211 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 POLE4Q9NR33 117 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 RHCGQ9UBD6 479 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 TMEM5Q9Y2B1 443 aa6.11□□□□□ -1.43
USP54-208ENST00000461520 MGAM2Q2M2H8 2515 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 MEGF8Q7Z7M0 2845 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 PPIAL4EA0A075B759 164 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 LOC105371242A0A075B767 164 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 PPIAL4CA0A0B4J2A2 164 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 TEX13CA0A0J9YWL9 993 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 ISPDA4D126 451 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 PRSS37A4D1T9 235 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 PPIAL4DF5H284 164 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 H7C1C5 153 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 TRIM77I1YAP6 450 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 NME4O00746 187 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 SGCEO43556 437 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 TIMM8AO60220 97 aaPredicted RBP6.1□□□□□ -1.43
USP54-208ENST00000461520 DOK2O60496 412 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 CCDC22O60826 627 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 FOXH1O75593 365 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 TUSC2O75896 110 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 SERPINA1P01009 418 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 PPIAL4FP0DN26 164 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 COX4I1P13073 169 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 KITLGP21583 273 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 TNFSF4P23510 183 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 GPR4P46093 362 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 COMPP49747 757 aaPredicted RBP6.1□□□□□ -1.43
USP54-208ENST00000461520 SLC7A2P52569 658 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 LSM6P62312 80 aaKnown RBP6.1□□□□□ -1.43
USP54-208ENST00000461520 LCN6P62502 163 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 TNFAIP6P98066 277 aaPredicted RBP6.1□□□□□ -1.43
USP54-208ENST00000461520 AQP6Q13520 282 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 MESTQ5EB52 335 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 GPR139Q6DWJ6 353 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 C8orf82Q6P1X6 216 aaPredicted RBP6.1□□□□□ -1.43
USP54-208ENST00000461520 TBPL2Q6SJ96 375 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 HACD2Q6Y1H2 254 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 BCDIN3DQ7Z5W3 292 aaKnown RBP6.1□□□□□ -1.43
USP54-208ENST00000461520 OR13C2Q8NGS9 318 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 SLC7A13Q8TCU3 470 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 ST7LQ8TDW4 575 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 FAM216AQ8WUB2 273 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 SAMD8Q96LT4 415 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 Q96M85 177 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 ZNF570Q96NI8 536 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 GPX7Q96SL4 187 aaPredicted RBP6.1□□□□□ -1.43
USP54-208ENST00000461520 NMNAT1Q9HAN9 279 aaPredicted RBP6.1□□□□□ -1.43
USP54-208ENST00000461520 TMEM106BQ9NUM4 274 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 ARMCX1Q9P291 453 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 IL19Q9UHD0 177 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 ADAM18Q9Y3Q7 739 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 NPTNQ9Y639 398 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 ENPP4Q9Y6X5 453 aa6.1□□□□□ -1.43
USP54-208ENST00000461520 A0A1W2PRQ8 180 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 TMEM89A2RUT3 159 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 SURF4O15260 269 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 KCNAB3O43448 404 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 PTP4A3O75365 173 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 KHDRBS3O75525 346 aaKnown RBP6.09□□□□□ -1.43
USP54-208ENST00000461520 NDUFB2O95178 105 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 IGHV2-70P01814 119 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 CTLA4P16410 223 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 ZNF26P17031 533 aaPredicted RBP6.09□□□□□ -1.43
USP54-208ENST00000461520 RHCEP18577 417 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 HTR5AP47898 357 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 GSK3BP49841 420 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 ACTG1P63261 375 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 RAB32Q13637 225 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 DGCR6Q14129 220 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 TMEM155Q4W5P6 130 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 HSP90B2PQ58FF3 399 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 KCTD20Q7Z5Y7 419 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 TSEN54Q7Z6J9 526 aaKnown RBP6.09□□□□□ -1.43
USP54-208ENST00000461520 ADCK1Q86TW2 530 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 SPARTQ8N0X7 666 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 SPICQ8N5J4 248 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 ZNF283Q8N7M2 679 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 PTP4A1Q93096 173 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 FAM162AQ96A26 154 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 HAVCR1Q96D42 359 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 RBM4Q9BWF3 364 aaKnown RBP6.09□□□□□ -1.43
USP54-208ENST00000461520 SUCNR1Q9BXA5 334 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 SYT4Q9H2B2 425 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 NTN4Q9HB63 628 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 KRCC1Q9NPI7 259 aaPredicted RBP6.09□□□□□ -1.43
USP54-208ENST00000461520 PLEK2Q9NYT0 353 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 UBAP1Q9NZ09 502 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 ABCD2Q9UBJ2 740 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 ATPIF1Q9UII2 106 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 PURGQ9UJV8 347 aaKnown RBP6.09□□□□□ -1.43
USP54-208ENST00000461520 RPS6KA6Q9UK32 745 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 SAMD4AQ9UPU9 718 aaKnown RBP6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms