RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ALKBH6Q3KRA9 238 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 CMTM4Q8IZR5 234 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 PTP4A1Q93096 173 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 DERL3Q96Q80 235 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 TREM1Q9NP99 234 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 NTMQ9P121 344 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 hCG_1809904A0A1W2PP81 198 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 A0A1W2PPE2 198 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 A0A1W2PR64 198 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 A0A1W2PRV1 198 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 RNF212BA8MTL3 300 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 PRR33A8MZF0 331 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 ATF1P18846 271 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 DDOSTP39656 456 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 SRP9P49458 86 aaKnown RBP6.59□□□□□ -1.35
SYNE1-213ENST00000448038 CCR9P51686 369 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 CDC20Q12834 499 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 CAMK2BQ13554 666 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 ZMYND11Q15326 602 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 SLC25A35Q3KQZ1 300 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 FOXB2Q5VYV0 432 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 FJX1Q86VR8 437 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 PRSS27Q9BQR3 290 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 DPCDQ9BVM2 203 aaPredicted RBP6.59□□□□□ -1.35
SYNE1-213ENST00000448038 RYDENQ9NUL5 291 aaKnown RBP6.59□□□□□ -1.35
SYNE1-213ENST00000448038 NECAP2Q9NVZ3 263 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 HAO2Q9NYQ3 351 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 FOXJ3Q9UPW0 622 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 LOC101059948A0A1B0GTJ6 334 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 SIRPB1O00241 398 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 FADS1O60427 444 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 TCRBP04435 133 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 CCR6P51684 374 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 FUT6P51993 359 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 LPCAT3Q6P1A2 487 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 OR2B2Q9GZK3 357 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 NFYBP25208 207 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 SNRPD2P62316 118 aaKnown RBP6.59□□□□□ -1.35
SYNE1-213ENST00000448038 ATP1A1-AS1Q5TC04 95 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 KANSL1Q7Z3B3 1105 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 TSEN54Q7Z6J9 526 aaKnown RBP6.59□□□□□ -1.35
SYNE1-213ENST00000448038 COMTD1Q86VU5 262 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 LYSMD2Q8IV50 215 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 LILRB2Q8N423 598 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 OR2AE1Q8NHA4 323 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 GLYATL2Q8WU03 294 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 SLC7A6Q92536 515 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 AICDAQ9GZX7 198 aa6.59□□□□□ -1.35
SYNE1-213ENST00000448038 A0A0J9YW62 118 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 KIR2DS1A0A191URI9 304 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 DNPH1O43598 174 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 TUSC2O75896 110 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 EIF4EP06730 217 aaKnown RBP6.59□□□□□ -1.36
SYNE1-213ENST00000448038 CCL2P13500 99 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 HLA-DOBP13765 273 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 KIR2DS4P43632 304 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 KIR2DS1Q14954 304 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 CTF1Q16619 201 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 EIF2S3LQ2VIR3 472 aaKnown RBP6.59□□□□□ -1.36
SYNE1-213ENST00000448038 CDONQ4KMG0 1287 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 TFAP2EQ6VUC0 442 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 C1orf87Q8N0U7 546 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 PRSS35Q8N3Z0 413 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 TMEM251Q8N6I4 163 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 OR56B2PQ8NGI1 322 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 FBXO17Q96EF6 278 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 ELMOD3Q96FG2 381 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 AKIRIN1Q9H9L7 192 aaPredicted RBP6.59□□□□□ -1.36
SYNE1-213ENST00000448038 SCPEP1Q9HB40 452 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 KCNE5Q9UJ90 142 aa6.59□□□□□ -1.36
SYNE1-213ENST00000448038 AQP8O94778 261 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 ALDOBP05062 364 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 EVX1P49640 407 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 GPM6AP51674 278 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 CLDN20P56880 219 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 DGCR2P98153 550 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 OR2T2Q6IF00 324 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 SNX18Q96RF0 628 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 PPIL3Q9H2H8 161 aaKnown RBP6.58□□□□□ -1.36
SYNE1-213ENST00000448038 RDH8Q9NYR8 311 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 SLC17A2O00624 439 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 SPRY1O43609 319 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-213ENST00000448038 IGKV3-11P04433 115 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 CEACAM1P13688 526 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 MGMTP16455 207 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 PMP22Q01453 160 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 INSL4Q14641 139 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 SCCPDHQ8NBX0 429 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 KIRREL1Q96J84 757 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 TECTBQ96PL2 329 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 WFDC6Q9BQY6 131 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 C12orf4Q9NQ89 552 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 UBQLN2Q9UHD9 624 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF391Q9UJN7 358 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 ST3GAL6Q9Y274 331 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 SLC33A1O00400 549 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-213ENST00000448038 DHRS3O75911 302 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 RGS11O94810 467 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 FGF9P31371 208 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-213ENST00000448038 NPY4RP50391 375 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms