RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 AKR7LQ8NHP1 331 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 MUCL1Q96DR8 90 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 DOK1Q99704 481 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 DHRS9Q9BPW9 319 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 CBLN4Q9NTU7 201 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 BABAM2Q9NXR7 383 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF224Q9NZL3 707 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 GRIP1Q9Y3R0 1128 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 SLC25A15Q9Y619 301 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 R4GMQ9 66 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 A0A1W2PR80 420 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 M0R135 149 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 SYNGR3O43761 229 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 COX5BP10606 129 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 CD40P25942 277 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 APLNRP35414 380 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF83P51522 516 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 RAB1AP62820 205 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 GALK2Q01415 458 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 BCL2L15Q5TBC7 163 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 LIPKQ5VXJ0 399 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 RPL22L1Q6P5R6 122 aaKnown RBP10.46□□□□□ -0.73
PTPRF-208ENST00000437607 OR13F1Q8NGS4 319 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 FGFBP3Q8TAT2 258 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 SMIM19Q96E16 107 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF799Q96GE5 643 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 BOD1Q96IK1 185 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 RADILQ96JH8 1075 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 KCNJ15Q99712 375 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 COMMD4Q9H0A8 199 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 NOX3Q9HBY0 568 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 TMEM160Q9NX00 188 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 CDC42EP3Q9UKI2 254 aa10.46□□□□□ -0.73
PTPRF-208ENST00000437607 TMEM269A0A1B0GVZ9 245 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 ZNF503-AS2A6NEH8 195 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 CCDC160A6NGH7 325 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 TMEM212A6NML5 194 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 F5H5K5 113 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 LALBAP00709 142 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 ANXA2P07355 339 aaKnown RBP10.45□□□□□ -0.74
PTPRF-208ENST00000437607 IGHV4-31P0DP07 118 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 CPEP16870 476 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 CELP19835 753 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 PAX7P23759 505 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 PTAFRP25105 342 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 DCTDP32321 178 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 GDI2P50395 445 aaKnown RBP10.45□□□□□ -0.74
PTPRF-208ENST00000437607 IDH3GP51553 393 aaPredicted RBP10.45□□□□□ -0.74
PTPRF-208ENST00000437607 PRKXP51817 358 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 TPTEP56180 551 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 MFGE8Q08431 387 aaPredicted RBP10.45□□□□□ -0.74
PTPRF-208ENST00000437607 ALKBH1Q13686 389 aaKnown RBP10.45□□□□□ -0.74
PTPRF-208ENST00000437607 DOC2BQ14184 412 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 TBC1D28Q2M2D7 210 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 TIMM50Q3ZCQ8 353 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 C1QTNF12Q5T7M4 302 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 SLC22A25Q6T423 547 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 CLEC2AQ6UVW9 174 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 SSX8Q7RTT4 187 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 MUC15Q8N387 334 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 C10orf105Q8TEF2 133 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 C4orf45Q96LM5 186 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 SP140LQ9H930 580 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 BRD7Q9NPI1 651 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 BATF3Q9NR55 127 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 NDUFB11Q9NX14 153 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 DYSFO75923 2080 aa10.45□□□□□ -0.74
PTPRF-208ENST00000437607 TRBV2A0A0J9YWF9 115 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 E9PI62 339 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 H7C417 338 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 LY6HO94772 140 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 UBCP0CG48 685 aaKnown RBP10.44□□□□□ -0.74
PTPRF-208ENST00000437607 SLC25A16P16260 332 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 CD36P16671 472 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 ZNF16P17020 682 aaPredicted RBP10.44□□□□□ -0.74
PTPRF-208ENST00000437607 PSMA1P25786 263 aaKnown RBP10.44□□□□□ -0.74
PTPRF-208ENST00000437607 STOMP27105 288 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 APEX1P27695 318 aaKnown RBP10.44□□□□□ -0.74
PTPRF-208ENST00000437607 GABRA5P31644 462 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 LIPAP38571 399 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 RGS6P49758 472 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 MMP16P51512 607 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 GTF2A1P52655 376 aaPredicted RBP10.44□□□□□ -0.74
PTPRF-208ENST00000437607 ZNF121P58317 390 aaPredicted RBP10.44□□□□□ -0.74
PTPRF-208ENST00000437607 DSCR9P59020 149 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 SRSF2Q01130 221 aaKnown RBP10.44□□□□□ -0.74
PTPRF-208ENST00000437607 SLC3A1Q07837 685 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 SSX1Q16384 188 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 WDR38Q5JTN6 314 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 DRAM2Q6UX65 266 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 TMEM108Q6UXF1 575 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 COMMD2Q86X83 199 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 CATSPERDQ86XM0 798 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 CLVS1Q8IUQ0 354 aaPredicted RBP10.44□□□□□ -0.74
PTPRF-208ENST00000437607 ZNF676Q8N7Q3 588 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 WDR31Q8NA23 367 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 SLC30A7Q8NEW0 376 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 OR2G2Q8NGZ5 317 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 TMIGD2Q96BF3 282 aa10.44□□□□□ -0.74
PTPRF-208ENST00000437607 PGAM5Q96HS1 289 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms