RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SUPT4H1P63272 117 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 THEM4Q5T1C6 240 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 KIAA0895LQ68EN5 471 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM71Q6P5X7 295 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 H1FNTQ75WM6 255 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 RD3Q7Z3Z2 195 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 DCXRQ7Z4W1 244 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 JAGN1Q8N5M9 183 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 UBAC2Q8NBM4 344 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 ADAD2Q8NCV1 583 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 OR8G5Q8NG78 346 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 OR13H1Q8NG92 308 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 OR4S1Q8NGB4 309 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 OR1N1Q8NGS0 311 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC25A43Q8WUT9 341 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 SFT2D1Q8WV19 159 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 DCUN1D4Q92564 292 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 SEC22AQ96IW7 307 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 C12orf57Q99622 126 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 RTN4RQ9BZR6 473 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 WWTR1Q9GZV5 400 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 SAV1Q9H4B6 383 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 PLEKHA2Q9HB19 425 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 SEBOXQ9HB31 216 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 FARSAQ9Y285 508 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 COA3Q9Y2R0 106 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 STARD10Q9Y365 291 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 TNRC6BQ9UPQ9 1833 aaKnown RBP5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 SERPINE3A8MV23 424 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 JTBO76095 146 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 SEMA4FO95754 770 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 GPANK1O95872 356 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 GLAP06280 429 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 H2BFMP0C1H6 154 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 MSX1P28360 303 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 AVPR2P30518 371 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 RAB5CP51148 216 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 CCR4P51679 360 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF133P52736 654 aaPredicted RBP5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 HTRA3P83110 453 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 SPOCK1Q08629 439 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 OPN5Q6U736 354 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 PARM1Q6UWI2 310 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 C1QL4Q86Z23 238 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 C9orf40Q8IXQ3 194 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 OR5AS1Q8N127 324 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 LRTM2Q8N967 370 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 PLPP5Q8NEB5 264 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 PATE1Q8WXA2 126 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 MMABQ96EY8 250 aaPredicted RBP5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 NECAB3Q96P71 396 aaPredicted RBP5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 RTBDNQ9BSG5 229 aaPredicted RBP5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 PBOV1Q9GZY1 135 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 RHOFQ9HBH0 211 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 CHST11Q9NPF2 352 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 ALKBH4Q9NXW9 302 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 METTL1Q9UBP6 276 aaKnown RBP5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 TCFL5Q9UL49 500 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 TMEM184BQ9Y519 407 aaPredicted RBP5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 B3GALT1Q9Y5Z6 326 aa5.09□□□□□ -1.6
CCDC88A-203ENST00000412148 TRBV23OR9-2A0A075B6M9 112 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 C5orf52A6NGY3 159 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 RHPN2P1A8MT19 583 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF878C9JN71 531 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 RNASEK-C17orf49H0YIS7 233 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 CCSO14618 274 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 CDC14BO60729 498 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 CTSBP07858 339 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 CYC1P08574 325 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 RCC1P18754 421 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 AGAP20933 346 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ADH6P28332 368 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 RPS27P42677 84 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 KCNAB1Q14722 419 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 PEA15Q15121 130 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 NNATQ16517 81 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 HIST3H3Q16695 136 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 AADACL3Q5VUY0 350 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 OGFOD3Q6PK18 319 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 KLHL24Q6TFL4 600 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 CLEC18BQ6UXF7 455 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 CD163Q86VB7 1156 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 GATSQ8NAP1 163 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ACBD4Q8NC06 268 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 OR52N4Q8NGI2 321 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 BADQ92934 168 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 PPP1R14AQ96A00 147 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ADAT3Q96EY9 351 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ADOQ96SZ5 270 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ELF4Q99607 663 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 USB1Q9BQ65 265 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 URM1Q9BTM9 101 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 SCRT1Q9BWW7 348 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 CNTNAP3Q9BZ76 1288 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 TBL1XR1Q9BZK7 514 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 SELENOIQ9C0D9 397 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ZMAT5Q9UDW3 170 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 MMP17Q9ULZ9 603 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 CEP192Q8TEP8 1941 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 A0A0A6YYD4 124 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms