RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NLKQ9UBE8 527 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 DIDO1Q9BTC0 2240 aaKnown RBP11.73□□□□□ -0.53
LIMS1-204ENST00000409441 IGKV1D-43A0A0B4J1Z2 117 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 A0A0B4J203 849 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 A0A0B4J293 547 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 NKX2-6A6NCS4 301 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 WIPF3A6NGB9 483 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 FAM90A27PA6NNH2 459 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 LANCL1O43813 399 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 NR2C1P13056 603 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 IGHV1-2P23083 117 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 MNDAP41218 407 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 SOX2P48431 317 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 FOXG1P55316 489 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-204ENST00000409441 MRPS10P82664 201 aaKnown RBP11.73□□□□□ -0.53
LIMS1-204ENST00000409441 SRSF1Q07955 248 aaKnown RBP eCLIP11.73□□□□□ -0.53
LIMS1-204ENST00000409441 P2RY6Q15077 328 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 ETFDHQ16134 617 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 CEACAM16Q2WEN9 425 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 ATAD3CQ5T2N8 411 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 C9orf135Q5VTT2 229 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 SLC25A47Q6Q0C1 308 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 CATSPERDQ86XM0 798 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 SMIM4Q8WVI0 70 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 ST6GAL2Q96JF0 529 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 LIN7BQ9HAP6 207 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 PLEKHA1Q9HB21 404 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 ELOVL5Q9NYP7 299 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 COPZ2Q9P299 210 aa11.73□□□□□ -0.53
LIMS1-204ENST00000409441 ANXA2P2A6NMY6 339 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 DHHO43323 396 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 CLDN14O95500 239 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 ANXA2P07355 339 aaKnown RBP11.72□□□□□ -0.53
LIMS1-204ENST00000409441 ADRA2CP18825 462 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 MPGP29372 298 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 MAGEB1P43366 347 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 ZNF133P52736 654 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-204ENST00000409441 FAM27E3Q08E93 113 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 DYRK1AQ13627 763 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 KCNJ8Q15842 424 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 TATDN3Q17R31 274 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 TBRG1Q3YBR2 411 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 SLC36A2Q495M3 483 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 PLA1AQ53H76 456 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 CXorf67Q86X51 503 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-204ENST00000409441 TOMM5Q8N4H5 51 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 TSEN15Q8WW01 171 aaKnown RBP11.72□□□□□ -0.53
LIMS1-204ENST00000409441 TMEM106AQ96A25 262 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 ORAI1Q96D31 301 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 SLC25A38Q96DW6 304 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 S100A16Q96FQ6 103 aaKnown RBP11.72□□□□□ -0.53
LIMS1-204ENST00000409441 NEK6Q9HC98 313 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 ZNF275Q9NSD4 429 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-204ENST00000409441 LRP12Q9Y561 859 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 R4GMQ9 66 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 UBR5O95071 2799 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-204ENST00000409441 FREM1Q5H8C1 2179 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 FLNCQ14315 2725 aa11.72□□□□□ -0.53
LIMS1-204ENST00000409441 A6NIN4 97 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 INMT-MINDY4F8WBC2 141 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 SRSF10O75494 262 aaKnown RBP11.71□□□□□ -0.53
LIMS1-204ENST00000409441 ITGA5P08648 1049 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 ASCL1P50553 236 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 ARF1P84077 181 aaKnown RBP11.71□□□□□ -0.53
LIMS1-204ENST00000409441 C10orf128Q5T292 105 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 SFRP5Q5T4F7 317 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 GLB1L2Q8IW92 636 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 UPRTQ96BW1 309 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 HAVCR1Q96D42 359 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 FOXN4Q96NZ1 517 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 DPAGT1Q9H3H5 408 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 OR5V1Q9UGF6 321 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 STEAP1Q9UHE8 339 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 FOXJ3Q9UPW0 622 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 ALG5Q9Y673 324 aa11.71□□□□□ -0.53
LIMS1-204ENST00000409441 NCOA6Q14686 2063 aaPredicted RBP11.71□□□□□ -0.53
LIMS1-204ENST00000409441 TRAV8-7A0A075B6U6 113 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 GABARAPH6UMI1 98 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 LYZL6O75951 148 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 ECDO95905 644 aaPredicted RBP11.71□□□□□ -0.54
LIMS1-204ENST00000409441 ISG15P05161 165 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 CD2P06729 351 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 FSTP19883 344 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 DCTDP32321 178 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 ZNF84P51523 738 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 ART1P52961 327 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 DGCR2P98153 550 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 TGFBR3Q03167 851 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 TSC22D1Q15714 1073 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 FBXL19-AS1Q494R0 122 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 ZFP69Q49AA0 526 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 OR7E24Q6IFN5 339 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 ZNF704Q6ZNC4 412 aaPredicted RBP11.71□□□□□ -0.54
LIMS1-204ENST00000409441 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.71□□□□□ -0.54
LIMS1-204ENST00000409441 DTX3Q8N9I9 347 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 OR10H5Q8NGA6 315 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 OR10AC1Q8NH08 325 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 ST7LQ8TDW4 575 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 UBASH3BQ8TF42 649 aa11.71□□□□□ -0.54
LIMS1-204ENST00000409441 SEC61A2Q9H9S3 476 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms