RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 OGG1O15527 345 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 XRCC3O43542 346 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 CCNOP22674 350 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 S100GP29377 79 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 PRSS12P56730 875 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 H2BFSP57053 126 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 GAMTQ14353 236 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 ABCA11PQ4W5N1 156 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 VHLLQ6RSH7 139 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF610Q8N9Z0 462 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 MARCH1Q8TCQ1 289 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 DNASE2O00115 360 aaPredicted RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 SIAH2O43255 324 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 HRH1P35367 487 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 CAV2P51636 162 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF41P51814 821 aaPredicted RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 SPCS3P61009 180 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 PKIAP61925 76 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 HNF4GQ14541 408 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 CHRFAM7AQ494W8 412 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 COMMD1Q8N668 190 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 BMFQ96LC9 184 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 SLC2A9Q9NRM0 540 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 TREM2Q9NZC2 230 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 CHRNA9Q9UGM1 479 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 NCOR1O75376 2440 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 H7C417 338 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF354AO60765 605 aaPredicted RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 CTAG2O75638 210 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 NKX2-2O95096 273 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ACAA2P42765 397 aaKnown RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF626Q68DY1 528 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 FJX1Q86VR8 437 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 BAP18Q8IXM2 172 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF440Q8IYI8 595 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 OR4K15Q8NH41 348 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 CPNE4Q96A23 557 aaPredicted RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 VOPP1Q96AW1 172 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 MRPS24Q96EL2 167 aaKnown RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 MTFP1Q9UDX5 166 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 GDF2Q9UK05 429 aaPredicted RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 MOKQ9UQ07 419 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 CSAG2Q9Y5P2 127 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 G3V3Y1 287 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 RBMXL2O75526 392 aaKnown RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 TRAPPC6AO75865 159 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 CSTBP04080 98 aaKnown RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 HEXAP06865 529 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ADRA2CP18825 462 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 GABRR1P24046 479 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 CD1CP29017 333 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 OR51T1Q8NGJ9 327 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 OR5H2Q8NGV7 314 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ADAMTS18Q8TE60 1221 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 SECTM1Q8WVN6 248 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 SOSTQ9BQB4 213 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ABHD6Q9BV23 337 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 TLNRD1Q9H1K6 362 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 DMRT1Q9Y5R6 373 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 TMED7-TICAM2A0A0A6YYA0 188 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 A0A1W2PPE2 198 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 SERPINA7P05543 415 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 DHRS2Q13268 280 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 RAB30Q15771 203 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF74Q16587 644 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 SPIN3Q5JUX0 258 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 RGS7BPQ6MZT1 257 aaPredicted RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF485Q8NCK3 441 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 DAZLQ92904 295 aaKnown RBP10.73□□□□□ -0.69
HMGB1-206ENST00000405805 SLCO5A1Q9H2Y9 848 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 MMP25Q9NPA2 562 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 UQCC1Q9NVA1 299 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 TMED7Q9Y3B3 224 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 ETV7Q9Y603 341 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 KCNMB2Q9Y691 235 aa10.73□□□□□ -0.69
HMGB1-206ENST00000405805 PQLC2LA1A4F0 135 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF320A2RRD8 509 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 OR6C6A6NF89 314 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 NUDT19A8MXV4 375 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 SFTPCP11686 197 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 HYAL1Q12794 435 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 PRTGQ2VWP7 1150 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 PLEKHN1Q494U1 663 aaPredicted RBP10.72□□□□□ -0.69
HMGB1-206ENST00000405805 PGAM5Q96HS1 289 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 MENTQ9BUN1 341 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 OR52A1Q9UKL2 312 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 C14orf166Q9Y224 244 aaKnown RBP10.72□□□□□ -0.69
HMGB1-206ENST00000405805 EFNB1P98172 346 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 SLC35D3Q5M8T2 416 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 DBX2Q6ZNG2 339 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 SP7Q8TDD2 431 aaPredicted RBP10.72□□□□□ -0.69
HMGB1-206ENST00000405805 ANKRD9Q96BM1 317 aaPredicted RBP10.72□□□□□ -0.69
HMGB1-206ENST00000405805 MALSU1Q96EH3 234 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 OR5B2Q96R09 309 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 PRRT1Q99946 306 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 LUZP4Q9P127 313 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 CHD7Q9P2D1 2997 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF850A8MQ14 1090 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF205O95201 554 aa10.72□□□□□ -0.69
HMGB1-206ENST00000405805 PMS2P2O95744 297 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms