RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 DAOP14920 347 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 CLN3Q13286 438 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 SHBQ15464 509 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 SLC35A4Q96G79 324 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 PISDQ9UG56 409 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 TRAV1-2A0A0B4J238 106 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 F7P08709 466 aaPredicted RBP7.98□□□□□ -1.13
LIG3-202ENST00000378526 NBPF12Q5TAG4 269 aaPredicted RBP7.98□□□□□ -1.13
LIG3-202ENST00000378526 LINC00052Q96N35 136 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 CHST11Q9NPF2 352 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 LMTK2Q8IWU2 1503 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 ZCWPW2A0A1B0GU75 182 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 SOD1P00441 154 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 MT-ATP6P00846 226 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 CA1P00915 261 aaPredicted RBP7.98□□□□□ -1.13
LIG3-202ENST00000378526 GALP22466 123 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 MEF2CQ06413 473 aaPredicted RBP7.98□□□□□ -1.13
LIG3-202ENST00000378526 IHHQ14623 411 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 PRSS45Q7RTY3 260 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 FADS6Q8N9I5 356 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 RPS4Y2Q8TD47 263 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 ACER1Q8TDN7 264 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 GPR152Q8TDT2 470 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 POM121L2Q96KW2 1035 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 GABARAPL3Q9BY60 117 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 IGFLR1Q9H665 355 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 MSL2Q9HCI7 577 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 NGBQ9NPG2 151 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 SLC17A5Q9NRA2 495 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 TREM2Q9NZC2 230 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 FLRT3Q9NZU0 649 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 SMPD2O60906 423 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 SUOXP51687 545 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 SMN1Q16637 294 aaKnown RBP7.98□□□□□ -1.13
LIG3-202ENST00000378526 SDHAF4Q5VUM1 108 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 KLHDC8AQ8IYD2 350 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 C1orf127Q8N9H9 656 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 RPEQ96AT9 228 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 R3HDM4Q96D70 268 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 E9PCH4 1651 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 RING1Q06587 406 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 EGR3Q06889 387 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 IL10RAQ13651 578 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 IL13RA2Q14627 380 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 LTC4SQ16873 150 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 OVCH2Q7RTZ1 564 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 NEUROG1Q92886 237 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 THOC3Q96J01 351 aaKnown RBP7.98□□□□□ -1.13
LIG3-202ENST00000378526 SLC17A9Q9BYT1 436 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 CRISPLD2Q9H0B8 497 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 PARP4Q9UKK3 1724 aaKnown RBP7.98□□□□□ -1.13
LIG3-202ENST00000378526 A4GNTQ9UNA3 340 aa7.98□□□□□ -1.13
LIG3-202ENST00000378526 FOLR2P14207 255 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 IL1RNP18510 177 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 RPS4Y1P22090 263 aaKnown RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 LBX1P52954 281 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 POLR2GP62487 172 aaKnown RBP eCLIP7.97□□□□□ -1.13
LIG3-202ENST00000378526 RPL30P62888 115 aaKnown RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 C18orf21Q32NC0 220 aaPredicted RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 NKAIN2Q5VXU1 208 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 LHFPL2Q6ZUX7 228 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 GEMIN2O14893 280 aaKnown RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 CST3P01034 146 aaPredicted RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 NID1P14543 1247 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 EPHA8P29322 1005 aaPredicted RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 C21orf58P58505 322 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 RTP2Q5QGT7 225 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 FIGNL2A6NMB9 653 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 CYB5R3P00387 301 aaPredicted RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 WNT3P56703 355 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 NSDHLQ15738 373 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 PKDCCQ504Y2 493 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 EMC4Q5J8M3 183 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 CLDN19Q8N6F1 224 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 LRRC15Q8TF66 581 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 LRRC29Q8WV35 223 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 PERPQ96FX8 193 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 GABRG3Q99928 467 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 SSBP4Q9BWG4 385 aaPredicted RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 COMMD5Q9GZQ3 224 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 MBNL1Q9NR56 388 aaKnown RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 TMEM184BQ9Y519 407 aaPredicted RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 HES2Q9Y543 173 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 CXCL14O95715 111 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 LAG3P18627 525 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 THBS4P35443 961 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 RPS21P63220 83 aaKnown RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 SMAD4Q13485 552 aaKnown RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 TWIST1Q15672 202 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 OR4F17Q8NGA8 305 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 OR1L4Q8NGR5 311 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 SORT1Q99523 831 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 MARVELD1Q9BSK0 173 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 ALX4Q9H161 411 aaPredicted RBP7.97□□□□□ -1.13
LIG3-202ENST00000378526 SRD5A3Q9H8P0 318 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 TRBV4-1A0A0J9YWV2 114 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 YJEFN3A6XGL0 299 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 INHBBP09529 407 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 SELEP16581 610 aa7.97□□□□□ -1.13
LIG3-202ENST00000378526 RPS15P62841 145 aaKnown RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms