RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 DCAF7P61962 342 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 SUPT4H1P63272 117 aaKnown RBP14.54□□□□□ -0.08
SDC4-201ENST00000372733 NSDHLQ15738 373 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 PRSS54Q6PEW0 395 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 DEGS2Q6QHC5 323 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 KLHL24Q6TFL4 600 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 GLIPR1L1Q6UWM5 242 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 IL34Q6ZMJ4 242 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 OR10C1Q96KK4 312 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 DUSP15Q9H1R2 295 aaPredicted RBP14.54□□□□□ -0.08
SDC4-201ENST00000372733 RHOFQ9HBH0 211 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 CTSFQ9UBX1 484 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 GPR132Q9UNW8 380 aa14.54□□□□□ -0.08
SDC4-201ENST00000372733 MEX3AA1L020 520 aaKnown RBP14.53□□□□□ -0.08
SDC4-201ENST00000372733 ZNF354AO60765 605 aaPredicted RBP14.53□□□□□ -0.08
SDC4-201ENST00000372733 HTR3BO95264 441 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 SFT2D2O95562 160 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 SLC2A1P11166 492 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 ANOS1P23352 680 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 OR3A4PP47883 348 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 C9orf50Q5SZB4 431 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 AVPI1Q5T686 147 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 KIAA0895LQ68EN5 471 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 COMMD2Q86X83 199 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 OR10H5Q8NGA6 315 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 OR5D14Q8NGL3 314 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 GLYATL2Q8WU03 294 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 RAB3CQ96E17 227 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 CDC6Q99741 560 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 RCC2Q9P258 522 aaKnown RBP14.53□□□□□ -0.08
SDC4-201ENST00000372733 MRPS28Q9Y2Q9 187 aaKnown RBP14.53□□□□□ -0.08
SDC4-201ENST00000372733 PCDH15Q96QU1 1955 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 ADAM10O14672 748 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 MBTPS2O43462 519 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 SCGNO76038 276 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 ZNF20P17024 532 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 RCC1P18754 421 aaPredicted RBP14.53□□□□□ -0.08
SDC4-201ENST00000372733 DAP3P51398 398 aaKnown RBP14.53□□□□□ -0.08
SDC4-201ENST00000372733 MRPS21P82921 87 aaKnown RBP14.53□□□□□ -0.08
SDC4-201ENST00000372733 HSF1Q00613 529 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 RAB32Q13637 225 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 DMRTC1Q5HYR2 192 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 DRAM2Q6UX65 266 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 SLC29A4Q7RTT9 530 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 C7orf61Q8IZ16 206 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 ADAMTS17Q8TE56 1095 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 NUDT22Q9BRQ3 303 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 IFT22Q9H7X7 185 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 ATPIF1Q9UII2 106 aa14.53□□□□□ -0.08
SDC4-201ENST00000372733 PHF3Q92576 2039 aaKnown RBP14.53□□□□□ -0.08
SDC4-201ENST00000372733 NUDT19A8MXV4 375 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 AGPAT2O15120 278 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 TO15178 435 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 LRP3O75074 770 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 HIST1H1DP16402 221 aaKnown RBP14.52□□□□□ -0.08
SDC4-201ENST00000372733 LPAR6P43657 344 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 FOXK1P85037 733 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 SMAD2Q15796 467 aaKnown RBP14.52□□□□□ -0.08
SDC4-201ENST00000372733 PGAP1Q75T13 922 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 C1orf147Q96MC9 270 aaPredicted RBP14.52□□□□□ -0.08
SDC4-201ENST00000372733 C5orf34Q96MH7 638 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 RAB18Q9NP72 206 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 GPR27Q9NS67 375 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 COPS7AQ9UBW8 275 aa14.52□□□□□ -0.08
SDC4-201ENST00000372733 CEP290O15078 2479 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 ARID1AO14497 2285 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 TLCD2A6NGC4 264 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 SHISA8B8ZZ34 492 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 NME2P22392 152 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 S100A10P60903 97 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 TLE3Q04726 772 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 VAX1Q5SQQ9 334 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 ZNF529Q6P280 563 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 FOXRED2Q8IWF2 684 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 OR5AS1Q8N127 324 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 AQP10Q96PS8 301 aa14.52□□□□□ -0.09
SDC4-201ENST00000372733 MTIF3Q9H2K0 278 aaKnown RBP14.52□□□□□ -0.09
SDC4-201ENST00000372733 FASLGP48023 281 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 SLC6A9P48067 706 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 BIDP55957 195 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 RPL7L1Q6DKI1 246 aaKnown RBP14.51□□□□□ -0.09
SDC4-201ENST00000372733 LANCL3Q6ZV70 420 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 H1FNTQ75WM6 255 aaPredicted RBP14.51□□□□□ -0.09
SDC4-201ENST00000372733 OR13G1Q8NGZ3 307 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 MAFIPQ8WZ33 124 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 ZNF775Q96BV0 537 aaPredicted RBP14.51□□□□□ -0.09
SDC4-201ENST00000372733 KLHDC7BQ96G42 594 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 SLC5A7Q9GZV3 580 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 METTL8Q9H825 291 aaKnown RBP14.51□□□□□ -0.09
SDC4-201ENST00000372733 ANAPC10Q9UM13 185 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 VDAC3Q9Y277 283 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 C10orf142B7Z368 130 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 LINC01387J3KSC0 135 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 SDCBPO00560 298 aaPredicted RBP14.51□□□□□ -0.09
SDC4-201ENST00000372733 CDC14BO60729 498 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 MED6O75586 246 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 SFTA3P0C7M3 94 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 DRD1P21728 446 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 GSK3AP49840 483 aa14.51□□□□□ -0.09
SDC4-201ENST00000372733 MEOX2P50222 304 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms