RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 KMT5CQ86Y97 462 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 SKA3Q8IX90 412 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 DTWD2Q8NBA8 298 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 ST8SIA2Q92186 375 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 RIMS4Q9H426 269 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-203ENST00000372407 OSGIN2Q9Y236 505 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 LRRC30A6NM36 301 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 LRP3O75074 770 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 SUMO3P55854 103 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-203ENST00000372407 CDK5Q00535 292 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 BHLHA9Q7RTU4 235 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 BTLAQ7Z6A9 289 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 ZNF573Q86YE8 665 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 LURAP1Q96LR2 239 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 CMTM3Q96MX0 182 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 GDF2Q9UK05 429 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-203ENST00000372407 NKX6-3A6NJ46 265 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 ZNF727A8MUV8 499 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 NKX2-2O95096 273 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 C1QAP02745 245 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 LIMS3P0CW19 117 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 LIMS4P0CW20 117 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 ZBTB37Q5TC79 503 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 LCN15Q6UWW0 184 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 DND1Q8IYX4 353 aaKnown RBP10.32□□□□□ -0.76
PTPRF-203ENST00000372407 H1FXQ92522 213 aaKnown RBP10.32□□□□□ -0.76
PTPRF-203ENST00000372407 RBM38Q9H0Z9 239 aaKnown RBP10.32□□□□□ -0.76
PTPRF-203ENST00000372407 LOXHD1Q8IVV2 1947 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 SHROOM3Q8TF72 1996 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 FAM221AA4D161 298 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 MGST1P10620 155 aaKnown RBP10.32□□□□□ -0.76
PTPRF-203ENST00000372407 SRFP11831 508 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 GLB1P16278 677 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 ATF1P18846 271 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 OR8G1Q15617 311 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 OTPQ5XKR4 325 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 GLCCI1Q86VQ1 547 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 OR5AS1Q8N127 324 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 TXN2Q99757 166 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 A0A1W2PPC1 479 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 P2RX3P56373 397 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 ENDOGQ14249 297 aaKnown RBP10.32□□□□□ -0.76
PTPRF-203ENST00000372407 HAGHQ16775 308 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 THNSL2Q86YJ6 484 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 CISD2Q8N5K1 135 aaKnown RBP10.32□□□□□ -0.76
PTPRF-203ENST00000372407 GPR32P1Q8NGA4 272 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 DOK1Q99704 481 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 SUCNR1Q9BXA5 334 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 ZNF318Q5VUA4 2279 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 SERPINE3A8MV23 424 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 SH2D1BO14796 132 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 APOA2P02652 100 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 SELEP16581 610 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 RAG2P55895 527 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 BAMBIQ13145 260 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 TMEM128Q5BJH2 165 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 RPUSD3Q6P087 351 aaKnown RBP10.32□□□□□ -0.76
PTPRF-203ENST00000372407 C6orf15Q6UXA7 325 aaPredicted RBP10.32□□□□□ -0.76
PTPRF-203ENST00000372407 SLC25A26Q70HW3 274 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 OR10P1Q8NGE3 313 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 OR5M8Q8NGP6 311 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 OTOSQ8NHW6 89 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 PP6455Q8WZ26 134 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 PELI1Q96FA3 418 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 TMEM231Q9H6L2 316 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 DLL4Q9NR61 685 aa10.32□□□□□ -0.76
PTPRF-203ENST00000372407 PLEKHB1Q9UF11 243 aaPredicted RBP10.32□□□□□ -0.76
PTPRF-203ENST00000372407 OR6C68A6NDL8 312 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 LMO7DNF2Z398 122 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 PYCARD-AS1I3L0S3 204 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 DCTN6O00399 190 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 OR2J2O76002 312 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 GSK3AP49840 483 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 CCL11P51671 97 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 FZD2Q14332 565 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 TMEM123Q8N131 208 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 TMEM229BQ8NBD8 167 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 IP6K3Q96PC2 410 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 EGLN1Q9GZT9 426 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 UFSP2Q9NUQ7 469 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 KLF13Q9Y2Y9 288 aaPredicted RBP10.31□□□□□ -0.76
PTPRF-203ENST00000372407 DLEC1Q9Y238 1755 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 MEIKINA0A087WXM9 373 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 A0A0B4J2E0 115 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 A0A1B0GX12 115 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 LILRA5A6NI73 299 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 PLPP2O43688 288 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 ZGLP1P0C6A0 271 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 FOSL1P15407 271 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 SPNP16150 400 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 ARR3P36575 388 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 RAB1AP62820 205 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 OR8U1Q8NH10 309 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 OR4C3Q8NH37 302 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 SLC23A1Q9UHI7 598 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 SVILO95425 2214 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 SPTY2D1-AS1A0A0U1RR47 76 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 CRYBB2P43320 205 aa10.31□□□□□ -0.76
PTPRF-203ENST00000372407 SUB1P53999 127 aaKnown RBP eCLIP10.31□□□□□ -0.76
PTPRF-203ENST00000372407 PIGPP57054 158 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms