RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 PGLYRP3Q96LB9 341 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 JSRP1Q96MG2 331 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-201ENST00000355766 OR8B4Q96RC9 309 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 NPAS1Q99742 590 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 CHCHD6Q9BRQ6 235 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 DCUN1D5Q9BTE7 237 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 CENPOQ9BU64 300 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 MRI1Q9BV20 369 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 RBM24Q9BX46 236 aaKnown RBP6.06□□□□□ -1.44
VPS13A-201ENST00000355766 MROQ9BYG7 248 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 SLC6A15Q9H2J7 730 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 B3GAT2Q9NPZ5 323 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 GLRX2Q9NS18 164 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 TXNL4BQ9NX01 149 aaKnown RBP6.06□□□□□ -1.44
VPS13A-201ENST00000355766 ATPIF1Q9UII2 106 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 MCTS1Q9ULC4 181 aaKnown RBP6.06□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF175Q9Y473 711 aa6.06□□□□□ -1.44
VPS13A-201ENST00000355766 A0A0J9YW62 118 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 LOC100506127A0A0U1RQW1 187 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 MBD3L3A6NE82 208 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 ACOD1A6NK06 481 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF716A6NP11 495 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 DEFB108AA8MXU0 73 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 AHRRA9YTQ3 701 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF879B4DU55 563 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 CLDN25C9JDP6 229 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 DCTN6O00399 190 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 GABRPO00591 440 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 CASKO14936 926 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 SMAD9O15198 467 aaKnown RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 CD5LO43866 347 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 SELENOFO60613 162 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 APOL3O95236 402 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 LALBAP00709 142 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 PLGP00747 810 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 APOC1P02654 83 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 MRPL3P09001 348 aaKnown RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 RFPL3SP0C7P2 107 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 FAM157CP0CG43 387 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 PAX1P15863 534 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF823P16415 610 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 CTSSP25774 331 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 LAP3P28838 519 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 SHC1P29353 583 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 CD40LGP29965 261 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 OPRM1P35372 400 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 NAA10P41227 235 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 GUCA1AP43080 201 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 CSNK1A1P48729 337 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 LHX2P50458 406 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 CLDN18P56856 261 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 SCAND1P57086 179 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF45Q02386 682 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 TNK1Q13470 666 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 SF3B4Q15427 424 aaKnown RBP eCLIP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 CHRFAM7AQ494W8 412 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 NSUN5P2Q63ZY6 315 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 SLC25A47Q6Q0C1 308 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 DPPA2Q7Z7J5 298 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 KLBQ86Z14 1044 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 C20orf196Q8IYI0 205 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 CCDC54Q8NEL0 328 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 OR10H5Q8NGA6 315 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 OR6Q1Q8NGQ2 317 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 OR6N2Q8NGY6 317 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 OR10D3Q8NH80 312 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 MBD3L2Q8NHZ7 208 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 RNF133Q8WVZ7 376 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 IGFBPL1Q8WX77 278 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 ACOT12Q8WYK0 555 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 RPL3LQ92901 407 aaKnown RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 BORCS5Q969J3 196 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 WDFY2Q96P53 400 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 OR2M2Q96R28 347 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 C19orf24Q9BVV8 132 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 LINC00470Q9BZP3 86 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 OR51E2Q9H255 320 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 TMEM185BQ9H7F4 350 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 ISG20L2Q9H9L3 353 aaKnown RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 BCO1Q9HAY6 547 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 DDX28Q9NUL7 540 aaKnown RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 ACOXLQ9NUZ1 547 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 PARPBPQ9NWS1 579 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 MRPL22Q9NWU5 206 aaKnown RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 GLTPQ9NZD2 209 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 RABL2AQ9UBK7 228 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-201ENST00000355766 CYB5R1Q9UHQ9 305 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 RABL2BQ9UNT1 228 aa6.05□□□□□ -1.44
VPS13A-201ENST00000355766 KIAA1549Q9HCM3 1950 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 FREM3P0C091 2139 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 CD8B2A6NJW9 211 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 RPL36A-HNRNPH2H7BZ11 118 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 J3QLW9 94 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF593O00488 134 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 TNFSF11O14788 317 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 SLC43A1O75387 559 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 UPK3AO75631 287 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 TRAPPC6AO75865 159 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 TPPPO94811 219 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 SYNGR4O95473 234 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms