RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 SPRY1O43609 319 aaPredicted RBP10.67□□□□□ -0.7
USP1-201ENST00000339950 DIRAS3O95661 229 aa10.67□□□□□ -0.7
USP1-201ENST00000339950 ZNF121P58317 390 aaPredicted RBP10.67□□□□□ -0.7
USP1-201ENST00000339950 RAB2AP61019 212 aa10.67□□□□□ -0.7
USP1-201ENST00000339950 MYBPHQ13203 477 aa10.67□□□□□ -0.7
USP1-201ENST00000339950 RIN1Q13671 783 aa10.67□□□□□ -0.7
USP1-201ENST00000339950 TSPO2Q5TGU0 170 aa10.67□□□□□ -0.7
USP1-201ENST00000339950 TMEM104Q8NE00 496 aa10.67□□□□□ -0.7
USP1-201ENST00000339950 OR10Z1Q8NGY1 313 aa10.67□□□□□ -0.7
USP1-201ENST00000339950 DDIT4LQ96D03 193 aa10.67□□□□□ -0.7
USP1-201ENST00000339950 ZNF442Q9H7R0 627 aa10.67□□□□□ -0.7
USP1-201ENST00000339950 A0A1B0GX78 115 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 LINC00862A6NCI5 91 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 J3QRE1 110 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 RAMP1O60894 148 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 UBBP0CG47 229 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 UBCP0CG48 685 aaKnown RBP10.66□□□□□ -0.7
USP1-201ENST00000339950 CLRN3Q8NCR9 226 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 PBOV1Q9GZY1 135 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 POLE3Q9NRF9 147 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 HAO2Q9NYQ3 351 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 PCDH15Q96QU1 1955 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 TMEM200CA6NKL6 621 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 KLK3P07288 261 aaPredicted RBP10.66□□□□□ -0.7
USP1-201ENST00000339950 GLRA1P23415 457 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 PDSS1Q5T2R2 415 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 ANKRD16Q6P6B7 361 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 ATRAIDQ6UW56 229 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 CDC20BQ86Y33 519 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 HSD17B11Q8NBQ5 300 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 OR14L1PQ8NHC6 308 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 PIGCQ92535 297 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 SEH1LQ96EE3 360 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 NXT1Q9UKK6 140 aaKnown RBP10.66□□□□□ -0.7
USP1-201ENST00000339950 TGM6O95932 706 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 CD27P26842 260 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 RRADP55042 308 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 FUT7Q11130 342 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 ZNF626Q68DY1 528 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 EIF5AL1Q6IS14 154 aaKnown RBP10.66□□□□□ -0.7
USP1-201ENST00000339950 TMEM71Q6P5X7 295 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 TMPPEQ6ZT21 453 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 SLAMF9Q96A28 289 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 ARHGAP5-AS1Q96IT6 56 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 ALKBH3Q96Q83 286 aaPredicted RBP10.66□□□□□ -0.7
USP1-201ENST00000339950 CDCA3Q99618 268 aaPredicted RBP10.66□□□□□ -0.7
USP1-201ENST00000339950 HDHD3Q9BSH5 251 aaPredicted RBP10.66□□□□□ -0.7
USP1-201ENST00000339950 LAT2Q9GZY6 243 aa10.66□□□□□ -0.7
USP1-201ENST00000339950 IGHV1OR15-9A0A0B4J2B8 117 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 OR5H15A6NDH6 313 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 TIAF1O95411 115 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 RPS4Y1P22090 263 aaKnown RBP10.65□□□□□ -0.7
USP1-201ENST00000339950 SNRPEP62304 92 aaKnown RBP10.65□□□□□ -0.7
USP1-201ENST00000339950 MFSD13AQ14CX5 517 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 ATPAF1Q5TC12 328 aaPredicted RBP10.65□□□□□ -0.7
USP1-201ENST00000339950 MISPQ8IVT2 679 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 LHFPL5Q8TAF8 219 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 SLC25A28Q96A46 364 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 CDC6Q99741 560 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 CFHR5Q9BXR6 569 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 HEXA-AS1Q9H8Q6 139 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 GDF2Q9UK05 429 aaPredicted RBP10.65□□□□□ -0.7
USP1-201ENST00000339950 IGHV1OR21-1A0A087WYE8 117 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 OR7C1O76099 320 aaPredicted RBP10.65□□□□□ -0.7
USP1-201ENST00000339950 EPHA1P21709 976 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 MTCP1P56278 107 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 RPS18P62269 152 aaKnown RBP10.65□□□□□ -0.7
USP1-201ENST00000339950 MRPS10P82664 201 aaKnown RBP10.65□□□□□ -0.7
USP1-201ENST00000339950 CEBPEQ15744 281 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 OR1M1Q8NGA1 313 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 REEP6Q96HR9 211 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 PCOLCE2Q9UKZ9 415 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 ICAM5Q9UMF0 924 aa10.65□□□□□ -0.7
USP1-201ENST00000339950 C14orf166Q9Y224 244 aaKnown RBP10.65□□□□□ -0.7
USP1-201ENST00000339950 CCL2P13500 99 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 CSNK1A1P48729 337 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 CX3CR1P49238 355 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 DAP3P51398 398 aaKnown RBP10.65□□□□□ -0.71
USP1-201ENST00000339950 CAV2P51636 162 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 GABREP78334 506 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 RSU1Q15404 277 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 MANEAQ5SRI9 462 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 AVPI1Q5T686 147 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 SLC38A9Q8NBW4 561 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 OR1S2Q8NGQ3 325 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 URM1Q9BTM9 101 aaKnown RBP10.65□□□□□ -0.71
USP1-201ENST00000339950 ZNF175Q9Y473 711 aa10.65□□□□□ -0.71
USP1-201ENST00000339950 PUS1Q9Y606 427 aaKnown RBP eCLIP10.65□□□□□ -0.71
USP1-201ENST00000339950 KIAA1671Q9BY89 1806 aa10.64□□□□□ -0.71
USP1-201ENST00000339950 A0A096LPE4 126 aa10.64□□□□□ -0.71
USP1-201ENST00000339950 A0A1W2PPZ6 126 aa10.64□□□□□ -0.71
USP1-201ENST00000339950 MEGF11A6BM72 1044 aa10.64□□□□□ -0.71
USP1-201ENST00000339950 ZNF98A6NK75 572 aa10.64□□□□□ -0.71
USP1-201ENST00000339950 WRBO00258 174 aa10.64□□□□□ -0.71
USP1-201ENST00000339950 BET1O15155 118 aa10.64□□□□□ -0.71
USP1-201ENST00000339950 ZNF217O75362 1048 aa10.64□□□□□ -0.71
USP1-201ENST00000339950 RBMXL2O75526 392 aaKnown RBP10.64□□□□□ -0.71
USP1-201ENST00000339950 MED6O75586 246 aa10.64□□□□□ -0.71
USP1-201ENST00000339950 SNAPINO95295 136 aa10.64□□□□□ -0.71
USP1-201ENST00000339950 TSPAN15O95858 294 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms