RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ASCL5Q7RTU5 278 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 CCL17Q92583 94 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 UPRTQ96BW1 309 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 OR5M11Q96RB7 305 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 C1orf123Q9NWV4 160 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 MPC1Q9Y5U8 109 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 IGKV3D-11A0A0A0MRZ8 115 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 HOXB1P14653 301 aaPredicted RBP9.01□□□□□ -0.97
USP54-201ENST00000339859 PTAFRP25105 342 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 ZNF81P51508 661 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 CYCSP99999 105 aaKnown RBP9.01□□□□□ -0.97
USP54-201ENST00000339859 OR5D13Q8NGL4 314 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 GON4LQ3T8J9 2241 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 MEIKINA0A087WXM9 373 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 IGKV3-11P04433 115 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 HOXA1P49639 335 aaPredicted RBP9.01□□□□□ -0.97
USP54-201ENST00000339859 ASCL1P50553 236 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 CLDN20P56880 219 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 ISL1P61371 349 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 SRPXP78539 464 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 PRDX4Q13162 271 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 HIKESHIQ53FT3 197 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 BEX5Q5H9J7 111 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 OSR2Q8N2R0 312 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 LILRB2Q8N423 598 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 OR2G2Q8NGZ5 317 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 CACNG6Q9BXT2 260 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 MBD2Q9UBB5 411 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 SLC22A13Q9Y226 551 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 LOC102723996A0A087X1L8 192 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 TRAV38-1A0A0B4J264 116 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 IGHV3-64DA0A0J9YX35 117 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 HPNP05981 417 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 CA6P23280 308 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 HLA-DMAP28067 261 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 ETV6P41212 452 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 C1QL3Q5VWW1 255 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 LCN10Q6JVE6 187 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 MRGPRGQ86SM5 289 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 CTHRC1Q96CG8 243 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 GPR137Q96N19 417 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 ACKR4Q9NPB9 350 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 GPR27Q9NS67 375 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 CEBPZOSA8MTT3 80 aa9□□□□□ -0.97
USP54-201ENST00000339859 TSPAN9O75954 239 aa9□□□□□ -0.97
USP54-201ENST00000339859 IFNA17P01571 189 aa9□□□□□ -0.97
USP54-201ENST00000339859 DNASE1P24855 282 aa9□□□□□ -0.97
USP54-201ENST00000339859 CLDN12P56749 244 aa9□□□□□ -0.97
USP54-201ENST00000339859 RTL8BQ17RB0 113 aa9□□□□□ -0.97
USP54-201ENST00000339859 UBE2UQ5VVX9 321 aa9□□□□□ -0.97
USP54-201ENST00000339859 LRRC20Q8TCA0 184 aa9□□□□□ -0.97
USP54-201ENST00000339859 NARFLQ9H6Q4 476 aa9□□□□□ -0.97
USP54-201ENST00000339859 OR5V1Q9UGF6 321 aa9□□□□□ -0.97
USP54-201ENST00000339859 ING1Q9UK53 422 aaPredicted RBP9□□□□□ -0.97
USP54-201ENST00000339859 EPPINO95925 133 aa9□□□□□ -0.97
USP54-201ENST00000339859 ACAA2P42765 397 aaKnown RBP9□□□□□ -0.97
USP54-201ENST00000339859 CDKN2AP42771 156 aaKnown RBP9□□□□□ -0.97
USP54-201ENST00000339859 CTU2Q2VPK5 515 aaKnown RBP9□□□□□ -0.97
USP54-201ENST00000339859 SLC25A26Q70HW3 274 aa9□□□□□ -0.97
USP54-201ENST00000339859 TSEN54Q7Z6J9 526 aaKnown RBP9□□□□□ -0.97
USP54-201ENST00000339859 AIPO00170 330 aa9□□□□□ -0.97
USP54-201ENST00000339859 CDC14BO60729 498 aa9□□□□□ -0.97
USP54-201ENST00000339859 EIF4EP06730 217 aaKnown RBP9□□□□□ -0.97
USP54-201ENST00000339859 ZNF728P0DKX0 622 aa9□□□□□ -0.97
USP54-201ENST00000339859 RPS27P42677 84 aaKnown RBP9□□□□□ -0.97
USP54-201ENST00000339859 RPL23AP62750 156 aaKnown RBP9□□□□□ -0.97
USP54-201ENST00000339859 INPP5JQ15735 1006 aaPredicted RBP9□□□□□ -0.97
USP54-201ENST00000339859 TRAT1Q6PIZ9 186 aa9□□□□□ -0.97
USP54-201ENST00000339859 TIPARPQ7Z3E1 657 aaKnown RBP9□□□□□ -0.97
USP54-201ENST00000339859 ZNF471Q9BX82 626 aaPredicted RBP9□□□□□ -0.97
USP54-201ENST00000339859 BANF2Q9H503 90 aa9□□□□□ -0.97
USP54-201ENST00000339859 OR6C68A6NDL8 312 aa9□□□□□ -0.97
USP54-201ENST00000339859 FAHP16930 419 aa9□□□□□ -0.97
USP54-201ENST00000339859 TNFSF10P50591 281 aa9□□□□□ -0.97
USP54-201ENST00000339859 MESTQ5EB52 335 aa9□□□□□ -0.97
USP54-201ENST00000339859 NHLRC1Q6VVB1 395 aa9□□□□□ -0.97
USP54-201ENST00000339859 C17orf78Q8N4C9 275 aa9□□□□□ -0.97
USP54-201ENST00000339859 IMMP1LQ96LU5 166 aa9□□□□□ -0.97
USP54-201ENST00000339859 SIGLEC12Q96PQ1 595 aa9□□□□□ -0.97
USP54-201ENST00000339859 PRO3102Q9H379 93 aa9□□□□□ -0.97
USP54-201ENST00000339859 ZNF703Q9H7S9 590 aaPredicted RBP9□□□□□ -0.97
USP54-201ENST00000339859 DOCK6Q96HP0 2047 aa9□□□□□ -0.97
USP54-201ENST00000339859 TRBV5-3A0A0A0MS03 114 aa9□□□□□ -0.97
USP54-201ENST00000339859 OR5B21A6NL26 309 aa9□□□□□ -0.97
USP54-201ENST00000339859 RPL19P84098 196 aaKnown RBP9□□□□□ -0.97
USP54-201ENST00000339859 BATF2Q8N1L9 274 aa9□□□□□ -0.97
USP54-201ENST00000339859 BPIFB2Q8N4F0 458 aa9□□□□□ -0.97
USP54-201ENST00000339859 LRRC29Q8WV35 223 aa9□□□□□ -0.97
USP54-201ENST00000339859 MGAT4CQ9UBM8 478 aa9□□□□□ -0.97
USP54-201ENST00000339859 LYRM1O43325 122 aa8.99□□□□□ -0.97
USP54-201ENST00000339859 OIP5O43482 229 aa8.99□□□□□ -0.97
USP54-201ENST00000339859 PRAF2O60831 178 aa8.99□□□□□ -0.97
USP54-201ENST00000339859 TMEM127O75204 238 aa8.99□□□□□ -0.97
USP54-201ENST00000339859 TUBG1P23258 451 aa8.99□□□□□ -0.97
USP54-201ENST00000339859 MFGE8Q08431 387 aaPredicted RBP8.99□□□□□ -0.97
USP54-201ENST00000339859 CLEC2AQ6UVW9 174 aa8.99□□□□□ -0.97
USP54-201ENST00000339859 MDP1Q86V88 176 aa8.99□□□□□ -0.97
USP54-201ENST00000339859 ZNF808Q8N4W9 903 aaPredicted RBP8.99□□□□□ -0.97
USP54-201ENST00000339859 SUMF1Q8NBK3 374 aa8.99□□□□□ -0.97
USP54-201ENST00000339859 OR51D1Q8NGF3 324 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms