RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CDH26Q8IXH8 852 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 MFSD4AQ8N468 514 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 NKAIN3Q8N8D7 197 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 SLC30A7Q8NEW0 376 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 S100ZQ8WXG8 99 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 PP6455Q8WZ26 134 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 ADAT3Q96EY9 351 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 SLC30A2Q9BRI3 323 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 ABRACLQ9P1F3 81 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 SLC25A15Q9Y619 301 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 V9GY05 133 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 C5orf49A4QMS7 147 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 ATXN7O15265 892 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 TBX1O43435 398 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 NCR1O76036 304 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 ATF1P18846 271 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 BMP5P22003 454 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 IL32P24001 234 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 CAV3P56539 151 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 TBC1D28Q2M2D7 210 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 FBXL19-AS1Q494R0 122 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 GLYATL3Q5SZD4 288 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 DDI2Q5TDH0 399 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 FAM166AQ6J272 317 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 CCDC190Q86UF4 302 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 OR5D14Q8NGL3 314 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 FGGYQ96C11 551 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 ORAI1Q96D31 301 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 REEP6Q96HR9 211 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 C6orf62Q9GZU0 229 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 TAS2R4Q9NYW5 299 aa12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 AK6Q9Y3D8 172 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-202ENST00000334448 TRGV8A0A0C4DH27 118 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 LMX1BO60663 402 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 ALDOBP05062 364 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 ERCC1P07992 297 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 ZNF20P17024 532 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 TUBG1P23258 451 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 CCKARP32238 428 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 S100A5P33763 92 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 WNT5AP41221 380 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 PPP3R1P63098 170 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 MRPL49Q13405 166 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 TSC22D1Q15714 1073 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 SLC25A35Q3KQZ1 300 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 C1orf100Q5SVJ3 147 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 TMEM42Q69YG0 159 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 MZT2AQ6P582 158 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 COMMD2Q86X83 199 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 LIX1LQ8IVB5 337 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 MS4A3Q96HJ5 214 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 FAM71F1Q96KD3 344 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 CMTM3Q96MX0 182 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 SOX7Q9BT81 388 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 REPIN1Q9BWE0 567 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 WDR12Q9GZL7 423 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 CHST5Q9GZS9 411 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 HMG20AQ9NP66 347 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 TMEM138Q9NPI0 162 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 TUBG2Q9NRH3 451 aa12.91□□□□□ -0.34
CCDC88C-202ENST00000334448 SMIM30A4D0T7 59 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 ANXA2P2A6NMY6 339 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 EEF1E1-BLOC1S5C9J1V9 151 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 CLDN25C9JDP6 229 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 SLC17A2O00624 439 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 CTDSP2O14595 271 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 EEF1E1O43324 174 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 SULT1B1O43704 296 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 CALCBP10092 127 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 BMP4P12644 408 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 RAB3AP20336 220 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 MAP2K3P46734 347 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 FAM3AP98173 230 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 ZNF92Q03936 586 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 MALLQ13021 153 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 C1orf174Q8IYL3 243 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 OR5AS1Q8N127 324 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 PAQR4Q8N4S7 273 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 SEMA6DQ8NFY4 1073 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 OR1M1Q8NGA1 313 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 SSC4DQ8WTU2 575 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 S100PBPQ96BU1 408 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 FOXRED1Q96CU9 486 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 UQCC2Q9BRT2 126 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 MIXL1Q9H2W2 232 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 PLEKHA1Q9HB21 404 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 DAPK2Q9UIK4 370 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 RHBDD3Q9Y3P4 386 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 CMAHPQ9Y471 501 aa12.9□□□□□ -0.34
CCDC88C-202ENST00000334448 ZGRF1Q86YA3 2104 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 H3BSH0 61 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 CELA3BP08861 270 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 ZNF35P13682 527 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 PRF1P14222 555 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 ACKR3P25106 362 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 BDKRB2P30411 391 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 CHRNB4P30926 498 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 RANBP1P43487 201 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 GSK3AP49840 483 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 IDH3GP51553 393 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms