RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 DTX1Q86Y01 620 aa13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 ZIC4Q8N9L1 334 aa13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 RHBDD1Q8TEB9 315 aa13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 PNPLA2Q96AD5 504 aa13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 LIN37Q96GY3 246 aaPredicted RBP13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 PGAM5Q96HS1 289 aa13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 SLC25A21Q9BQT8 299 aaPredicted RBP13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 PIGQQ9BRB3 760 aa13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 TCFL5Q9UL49 500 aa13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 PADI1Q9ULC6 663 aa13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 LOXL2Q9Y4K0 774 aa13.09□□□□□ -0.31
CLCNKA-201ENST00000331433 A0A0A6YYD4 124 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 F5H5P2 479 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 VAMP5O95183 116 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 MELTFP08582 738 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 NR2C1P13056 603 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 CCL1P22362 96 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 NFYAP23511 347 aaPredicted RBP13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 OPCMLQ14982 345 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 DOK3Q7L591 496 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 TIPARPQ7Z3E1 657 aaKnown RBP13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 CDH26Q8IXH8 852 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 TMEM105Q8N8V8 129 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 LYZL4Q96KX0 146 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 C1orf147Q96MC9 270 aaPredicted RBP13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 NAA11Q9BSU3 229 aaPredicted RBP13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 BANF2Q9H503 90 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 FBXO4Q9UKT5 387 aa13.08□□□□□ -0.31
CLCNKA-201ENST00000331433 IGKV1-9A0A0C4DH69 117 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 LEUTXA8MZ59 168 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 B4E171 279 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 L7N2F9 121 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 DHHO43323 396 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 MPIG6BO95866 241 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 F10P00742 488 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 IFNA7P01567 189 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 ACP1P24666 158 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 TSPAN7P41732 249 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 RNASE10Q5GAN6 216 aaKnown RBP13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 PGAP1Q75T13 922 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 OR10R2Q8NGX6 335 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 NPRL2Q8WTW4 380 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 TMEM41AQ96HV5 264 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 ALX4Q9H161 411 aaPredicted RBP13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 LPAR5Q9H1C0 372 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 DOCK10Q96BY6 2186 aa13.08□□□□□ -0.32
CLCNKA-201ENST00000331433 OR14I1A6ND48 311 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 ARPC5O15511 151 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 GP1BAP07359 652 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 DBHP09172 617 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 RFPL3SP0C7P2 107 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 B3GALT5-AS1P59052 145 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 CXADRP78310 365 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 GJC3Q8NFK1 279 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 OR5D18Q8NGL1 313 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 OR14K1Q8NGZ2 314 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 CT55Q8WUE5 264 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 CCDC107Q8WV48 283 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 SGCZQ96LD1 299 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 GPER1Q99527 375 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 ULBP2Q9BZM5 246 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 ZNF107Q9UII5 783 aaPredicted RBP13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 FOXD3Q9UJU5 478 aaPredicted RBP13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 KCNK7Q9Y2U2 307 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 COL27A1Q8IZC6 1860 aaPredicted RBP13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 FXYD6-FXYD2A0A087WZ82 144 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 MCRIP1C9JLW8 97 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 SSX5O60225 188 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 P04436 131 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 HRH1P35367 487 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 RSPO1Q2MKA7 263 aaPredicted RBP13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 ARMC10Q8N2F6 343 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 OR14L1PQ8NHC6 308 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 SFXN2Q96NB2 322 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 NECAB3Q96P71 396 aaPredicted RBP13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 EDEM2Q9BV94 578 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 TMPRSS13Q9BYE2 586 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 FXYD6Q9H0Q3 95 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 UBQLN2Q9UHD9 624 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 VSIG4Q9Y279 399 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 KNTC1P50748 2209 aa13.07□□□□□ -0.32
CLCNKA-201ENST00000331433 RPS10-NUDT3A0A1W2PQS6 291 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 DISC1C4P0D8 188 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 H3BUI4 141 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 SOCS1O15524 211 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 SEC61A1P61619 476 aaKnown RBP13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 MEF2DQ14814 521 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 FAM109AQ8N4B1 249 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 C12orf45Q8N5I9 185 aaPredicted RBP13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 ESX1Q8N693 406 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 MRGPRFQ96AM1 343 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 ARRDC1-AS1Q9H2J1 176 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 IFT46Q9NQC8 304 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 FBLN5Q9UBX5 448 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 PCSK5Q92824 1860 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 CDC14BO60729 498 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 RGS11O94810 467 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 CTSSP25774 331 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 NTF4P34130 210 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 STARP49675 285 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms