RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CALCBP10092 127 aa8.98□□□□□ -0.97
COL6A3-201ENST00000295550 PCBP4P57723 403 aaKnown RBP8.98□□□□□ -0.97
COL6A3-201ENST00000295550 SPANXN5Q5MJ07 72 aa8.98□□□□□ -0.97
COL6A3-201ENST00000295550 SLC16A12Q6ZSM3 486 aa8.98□□□□□ -0.97
COL6A3-201ENST00000295550 ZNF683Q8IZ20 524 aa8.98□□□□□ -0.97
COL6A3-201ENST00000295550 MFSD4AQ8N468 514 aa8.98□□□□□ -0.97
COL6A3-201ENST00000295550 ESRP2Q9H6T0 727 aaKnown RBP8.98□□□□□ -0.97
COL6A3-201ENST00000295550 HIST1H3AP68431 136 aa8.98□□□□□ -0.97
COL6A3-201ENST00000295550 LBHQ53QV2 105 aaPredicted RBP8.98□□□□□ -0.97
COL6A3-201ENST00000295550 PFN4Q8NHR9 129 aa8.98□□□□□ -0.97
COL6A3-201ENST00000295550 HMGCLL1Q8TB92 370 aa8.98□□□□□ -0.97
COL6A3-201ENST00000295550 DYRK2Q92630 601 aa8.98□□□□□ -0.97
COL6A3-201ENST00000295550 ARPC3O15145 178 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 CD37P11049 281 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 CLDN20P56880 219 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 CISD2Q8N5K1 135 aaKnown RBP8.97□□□□□ -0.97
COL6A3-201ENST00000295550 SLC35A4Q96G79 324 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 PRSS16Q9NQE7 514 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 MAN2B1O00754 1011 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 MSRB3Q8IXL7 192 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 ZNF740Q8NDX6 193 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 CXorf58Q96LI9 332 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 MMP26Q9NRE1 261 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 PTRH2Q9Y3E5 179 aaKnown RBP8.97□□□□□ -0.97
COL6A3-201ENST00000295550 EFSO43281 561 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 ZNF217O75362 1048 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 DRD1P21728 446 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 ZNF385BQ569K4 471 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 Q6ZN92 141 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 GDPD3Q7L5L3 318 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 DCXRQ7Z4W1 244 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 EXTL1Q92935 676 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 KIR3DX1Q9H7L2 352 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 LTB4R2Q9NPC1 389 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 A0A1W2PNV4 684 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 ZNF77Q15935 545 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 C8orf82Q6P1X6 216 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-201ENST00000295550 NYNRINQ9P2P1 1898 aaKnown RBP8.97□□□□□ -0.97
COL6A3-201ENST00000295550 PRKRAO75569 313 aaKnown RBP8.97□□□□□ -0.97
COL6A3-201ENST00000295550 RRASP10301 218 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 TNFRSF4P43489 277 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 CTBSQ01459 385 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 NR0B2Q15466 257 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 PET117Q6UWS5 81 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 FAM71CQ8NEG0 241 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 GPX8Q8TED1 209 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 H1FXQ92522 213 aaKnown RBP8.97□□□□□ -0.97
COL6A3-201ENST00000295550 PRAMEF25A6NGN4 478 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 UTS2O95399 124 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 PRAMEF5Q5TYX0 476 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 PRAMEF6Q5VXH4 476 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 ANGPTL5Q86XS5 388 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 OR2AE1Q8NHA4 323 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 SEH1LQ96EE3 360 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 PIGQQ9BRB3 760 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 NGBQ9NPG2 151 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 CHST2Q9Y4C5 530 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 ANKRD34AQ69YU3 496 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 POM121BA6NF01 834 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 ZFAND5O76080 213 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 PRSS23O95084 383 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 CLDN2P57739 230 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 C21orf58P58505 322 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 GUK1Q16774 197 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 AGBL4Q5VU57 503 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 SLC6A13Q9NSD5 602 aa8.97□□□□□ -0.97
COL6A3-201ENST00000295550 LOC107986453A0A1B0GWG9 222 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 OR5K3A6NET4 321 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 SERINC4A6NH21 518 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 BMPR1BO00238 502 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 OR5G3P0C626 314 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 PCMT1P22061 227 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 MS4A10Q96PG2 267 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 CTRCQ99895 268 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 CHRDL1Q9BU40 450 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 OR1A1Q9P1Q5 309 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 LRP3O75074 770 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 OR5H8P0DN80 308 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 IAPPP10997 89 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 NDUFB7P17568 137 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 MEOX2P50222 304 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 SSR4P51571 173 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 CNN1P51911 297 aaKnown RBP8.96□□□□□ -0.97
COL6A3-201ENST00000295550 LIM2P55344 173 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 NHLH1Q02575 133 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 NHLH2Q02577 135 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 SSBP1Q04837 148 aaKnown RBP8.96□□□□□ -0.97
COL6A3-201ENST00000295550 PHOSPHO2Q8TCD6 241 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 TRAPPC4Q9Y296 219 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 ETFDHQ16134 617 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 ZNF429Q86V71 674 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 SLIRPQ9GZT3 109 aaKnown RBP8.96□□□□□ -0.97
COL6A3-201ENST00000295550 PLEKHA2Q9HB19 425 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 A0A087X0M5 115 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 A0A1B0GX30 115 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 COX5AP20674 150 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 SNRPNP63162 240 aaKnown RBP8.96□□□□□ -0.97
COL6A3-201ENST00000295550 BARHL1Q9BZE3 327 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 BCL2L10Q9HD36 194 aa8.96□□□□□ -0.97
COL6A3-201ENST00000295550 SLC35E2P0CK97 266 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms